RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 WDR20Q8TBZ3 569 aa15.08■□□□□ 0
USP40-206ENST00000443711 SLC13A3Q8WWT9 602 aa15.08■□□□□ 0
USP40-206ENST00000443711 TM4SF19Q96DZ7 209 aa15.08■□□□□ 0
USP40-206ENST00000443711 ZNF285Q96NJ3 590 aa15.08■□□□□ 0
USP40-206ENST00000443711 FRG2BQ96QU4 278 aa15.08■□□□□ 0
USP40-206ENST00000443711 SORT1Q99523 831 aa15.08■□□□□ 0
USP40-206ENST00000443711 C20orf27Q9GZN8 174 aa15.08■□□□□ 0
USP40-206ENST00000443711 TNFRSF12AQ9NP84 129 aa15.08■□□□□ 0
USP40-206ENST00000443711 IRAK4Q9NWZ3 460 aa15.08■□□□□ 0
USP40-206ENST00000443711 SLC39A1Q9NY26 324 aa15.08■□□□□ 0
USP40-206ENST00000443711 TRAF6Q9Y4K3 522 aa15.08■□□□□ 0
USP40-206ENST00000443711 TIMM22Q9Y584 194 aa15.08■□□□□ 0
USP40-206ENST00000443711 FAM149AA5PLN7 773 aa15.07■□□□□ 0
USP40-206ENST00000443711 PLD2O14939 933 aa15.07■□□□□ 0
USP40-206ENST00000443711 POLR1CO15160 346 aaPredicted RBP15.07■□□□□ 0
USP40-206ENST00000443711 ULK1O75385 1050 aa15.07■□□□□ 0
USP40-206ENST00000443711 CLEC3AO75596 197 aa15.07■□□□□ 0
USP40-206ENST00000443711 OR2B3O76000 313 aa15.07■□□□□ 0
USP40-206ENST00000443711 CHEK2O96017 543 aa15.07■□□□□ 0
USP40-206ENST00000443711 SERPIND1P05546 499 aa15.07■□□□□ 0
USP40-206ENST00000443711 SLC35G6P0C7Q6 338 aa15.07■□□□□ 0
USP40-206ENST00000443711 PIK3CBP42338 1070 aa15.07■□□□□ 0
USP40-206ENST00000443711 RPL14P50914 215 aaKnown RBP15.07■□□□□ 0
USP40-206ENST00000443711 FOXA1P55317 472 aa15.07■□□□□ 0
USP40-206ENST00000443711 CYP4F2P78329 520 aa15.07■□□□□ 0
USP40-206ENST00000443711 OCRLQ01968 901 aa15.07■□□□□ 0
USP40-206ENST00000443711 GUCY1A3Q02108 690 aa15.07■□□□□ 0
USP40-206ENST00000443711 ZNF33BQ06732 778 aa15.07■□□□□ 0
USP40-206ENST00000443711 PWP1Q13610 501 aa15.07■□□□□ 0
USP40-206ENST00000443711 DDX39BQ13838 428 aaKnown RBP15.07■□□□□ 0
USP40-206ENST00000443711 MANEAQ5SRI9 462 aa15.07■□□□□ 0
USP40-206ENST00000443711 VN1R4Q7Z5H5 301 aa15.07■□□□□ 0
USP40-206ENST00000443711 PPP1R3BQ86XI6 285 aa15.07■□□□□ 0
USP40-206ENST00000443711 AFAP1L2Q8N4X5 818 aa15.07■□□□□ 0
USP40-206ENST00000443711 CSNK1A1LQ8N752 337 aa15.07■□□□□ 0
USP40-206ENST00000443711 OR1L3Q8NH93 324 aa15.07■□□□□ 0
USP40-206ENST00000443711 HUS1BQ8NHY5 278 aa15.07■□□□□ 0
USP40-206ENST00000443711 NT5CQ8TCD5 201 aa15.07■□□□□ 0
USP40-206ENST00000443711 ZNF473Q8WTR7 871 aaKnown RBP15.07■□□□□ 0
USP40-206ENST00000443711 SELENOMQ8WWX9 145 aa15.07■□□□□ 0
USP40-206ENST00000443711 CCT6BQ92526 530 aa15.07■□□□□ 0
USP40-206ENST00000443711 MTFMTQ96DP5 389 aaKnown RBP15.07■□□□□ 0
USP40-206ENST00000443711 PRR11Q96HE9 360 aaPredicted RBP15.07■□□□□ 0
USP40-206ENST00000443711 KCNA7Q96RP8 456 aa15.07■□□□□ 0
USP40-206ENST00000443711 SPRTNQ9H040 489 aaPredicted RBP15.07■□□□□ 0
USP40-206ENST00000443711 SYNPO2LQ9H987 977 aa15.07■□□□□ 0
USP40-206ENST00000443711 PSD3Q9NYI0 1048 aa15.07■□□□□ 0
USP40-206ENST00000443711 ZDHHC2Q9UIJ5 367 aa15.07■□□□□ 0
USP40-206ENST00000443711 HAO1Q9UJM8 370 aa15.07■□□□□ 0
USP40-206ENST00000443711 FOXE1O00358 373 aaPredicted RBP15.06■□□□□ 0
USP40-206ENST00000443711 SERPINA6P08185 405 aa15.06■□□□□ 0
USP40-206ENST00000443711 FGF5P12034 268 aa15.06■□□□□ 0
USP40-206ENST00000443711 SERPINB3P29508 390 aa15.06■□□□□ 0
USP40-206ENST00000443711 NEK2P51955 445 aa15.06■□□□□ 0
USP40-206ENST00000443711 MAPK10P53779 464 aa15.06■□□□□ 0
USP40-206ENST00000443711 RAB15P59190 212 aa15.06■□□□□ 0
USP40-206ENST00000443711 RGS1Q08116 209 aa15.06■□□□□ 0
USP40-206ENST00000443711 GRM7Q14831 915 aa15.06■□□□□ 0
USP40-206ENST00000443711 PRTGQ2VWP7 1150 aa15.06■□□□□ 0
USP40-206ENST00000443711 SGO1Q5FBB7 561 aa15.06■□□□□ 0
USP40-206ENST00000443711 C3orf38Q5JPI3 329 aa15.06■□□□□ 0
USP40-206ENST00000443711 KANK2Q63ZY3 851 aa15.06■□□□□ 0
USP40-206ENST00000443711 CLEC6AQ6EIG7 209 aa15.06■□□□□ 0
USP40-206ENST00000443711 TLDC1Q6P9B6 456 aa15.06■□□□□ 0
USP40-206ENST00000443711 FOXR1Q6PIV2 292 aa15.06■□□□□ 0
USP40-206ENST00000443711 CEACAM20Q6UY09 585 aa15.06■□□□□ 0
USP40-206ENST00000443711 VN1R5Q7Z5H4 357 aa15.06■□□□□ 0
USP40-206ENST00000443711 CRLF3Q8IUI8 442 aa15.06■□□□□ 0
USP40-206ENST00000443711 ZNF781Q8N8C0 355 aa15.06■□□□□ 0
USP40-206ENST00000443711 TTC29Q8NA56 475 aaPredicted RBP15.06■□□□□ 0
USP40-206ENST00000443711 AGR3Q8TD06 166 aa15.06■□□□□ 0
USP40-206ENST00000443711 CREB3L4Q8TEY5 395 aa15.06■□□□□ 0
USP40-206ENST00000443711 CMTM7Q96FZ5 175 aa15.06■□□□□ 0
USP40-206ENST00000443711 C7orf26Q96N11 449 aa15.06■□□□□ 0
USP40-206ENST00000443711 TAAR9Q96RI9 348 aa15.06■□□□□ 0
USP40-206ENST00000443711 MTERF1Q99551 399 aaKnown RBP15.06■□□□□ 0
USP40-206ENST00000443711 CCDC134Q9H6E4 229 aa15.06■□□□□ 0
USP40-206ENST00000443711 ENAMQ9NRM1 1142 aa15.06■□□□□ 0
USP40-206ENST00000443711 PISDQ9UG56 409 aa15.06■□□□□ 0
USP40-206ENST00000443711 FIS1Q9Y3D6 152 aa15.06■□□□□ 0
USP40-206ENST00000443711 FITM1A5D6W6 292 aa15.05■□□□□ -0
USP40-206ENST00000443711 URADA6NGE7 173 aa15.05■□□□□ -0
USP40-206ENST00000443711 TCP11X1B4DZS4 312 aa15.05■□□□□ -0
USP40-206ENST00000443711 H3BMH7 237 aa15.05■□□□□ -0
USP40-206ENST00000443711 POLR3GO15318 223 aaPredicted RBP15.05■□□□□ -0
USP40-206ENST00000443711 ZSCAN9O15535 394 aaPredicted RBP15.05■□□□□ -0
USP40-206ENST00000443711 NDUFS4O43181 175 aa15.05■□□□□ -0
USP40-206ENST00000443711 HYAL3O43820 417 aaPredicted RBP15.05■□□□□ -0
USP40-206ENST00000443711 PDYNP01213 254 aa15.05■□□□□ -0
USP40-206ENST00000443711 STATHP02808 62 aa15.05■□□□□ -0
USP40-206ENST00000443711 CTSBP07858 339 aa15.05■□□□□ -0
USP40-206ENST00000443711 ITIH1P19827 911 aa15.05■□□□□ -0
USP40-206ENST00000443711 PTX3P26022 381 aaPredicted RBP15.05■□□□□ -0
USP40-206ENST00000443711 ETV5P41161 510 aa15.05■□□□□ -0
USP40-206ENST00000443711 EMP3P54852 163 aa15.05■□□□□ -0
USP40-206ENST00000443711 FOXC1Q12948 553 aa15.05■□□□□ -0
USP40-206ENST00000443711 FAM214AQ32MH5 1076 aa15.05■□□□□ -0
USP40-206ENST00000443711 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.05■□□□□ -0
USP40-206ENST00000443711 TCHHL1Q5QJ38 904 aaPredicted RBP15.05■□□□□ -0
USP40-206ENST00000443711 DCAF12Q5T6F0 453 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms