RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CHRNA3P32297 505 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 OR1D5P58170 312 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 HNRNPKP61978 463 aaKnown RBP eCLIP3.21□□□□□ -1.9
LINC01040-201ENST00000425048 SNAPC1Q16533 368 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 TMEM44Q2T9K0 475 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 ALFQ53S48 1182 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 ZNF506Q5JVG8 444 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 TAF3Q5VWG9 929 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 OR9Q2Q8NGE9 314 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 KIAA1524Q8TCG1 905 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 ANP32BQ92688 251 aaKnown RBP3.21□□□□□ -1.9
LINC01040-201ENST00000425048 ESAMQ96AP7 390 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 SLC22A18Q96BI1 424 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 MOB3AQ96BX8 217 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 YY1AP1Q9H869 796 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 CUTCQ9NTM9 273 aa3.21□□□□□ -1.9
LINC01040-201ENST00000425048 ZBED9Q6R2W3 1325 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 A0A087WZ39 114 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 TRGV8A0A0C4DH27 118 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 hCG_38984A0A1B0GV85 526 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 MTMR11A4FU01 709 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 K7EQG2 157 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 FRAT2O75474 233 aaPredicted RBP3.2□□□□□ -1.9
LINC01040-201ENST00000425048 MBD4O95243 580 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 IGKV3-11P04433 115 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 PTMAP06454 111 aaKnown RBP3.2□□□□□ -1.9
LINC01040-201ENST00000425048 QDPRP09417 244 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 LINGO3P0C6S8 592 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 SAGP10523 405 aaPredicted RBP3.2□□□□□ -1.9
LINC01040-201ENST00000425048 MATKP42679 507 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 STAT2P52630 851 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 ADGRD2Q7Z7M1 963 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 CARM1Q86X55 608 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 CDH20Q9HBT6 801 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 GSN-AS1Q9NRJ2 163 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 ZNF215Q9UL58 517 aaPredicted RBP3.2□□□□□ -1.9
LINC01040-201ENST00000425048 RPS6KL1Q9Y6S9 549 aa3.2□□□□□ -1.9
LINC01040-201ENST00000425048 WDR97A6NE52 1622 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 SAP30O75446 220 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 EIF3JO75822 258 aaKnown RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 VENTXO95231 258 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 HOXC4P09017 264 aaPredicted RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 RGRP47804 291 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 LHX1P48742 406 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 PRKG2Q13237 762 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 MLF2Q15773 248 aaPredicted RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 TIMM50Q3ZCQ8 353 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 OR4C11Q6IEV9 310 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 CYB5D1Q6P9G0 228 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 MTERF4Q7Z6M4 381 aaKnown RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 LRRC49Q8IUZ0 686 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 RYBPQ8N488 228 aaPredicted RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 KCNE4Q8WWG9 221 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 HDAC2Q92769 488 aaKnown RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 TSACCQ96A04 125 aaPredicted RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 PI4K2AQ9BTU6 479 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 CCDC94Q9BW85 323 aaPredicted RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 PRMT7Q9NVM4 692 aaPredicted RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 IL36AQ9UHA7 158 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 CPSF3Q9UKF6 684 aaKnown RBP3.19□□□□□ -1.9
LINC01040-201ENST00000425048 PILRAQ9UKJ1 303 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 UNC13AQ9UPW8 1703 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 CEP162Q5TB80 1403 aa3.19□□□□□ -1.9
LINC01040-201ENST00000425048 CUX2O14529 1486 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 E7ENQ6 273 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 CCL24O00175 119 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 ZNF749O43361 778 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 TNFSF12O43508 249 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 UMPSP11172 480 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 C4BPBP20851 252 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 GCH1P30793 250 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 DCAF7P61962 342 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 RASGEF1BQ0VAM2 473 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 PCLAFQ15004 111 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 NPTX1Q15818 432 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 NHLRC3Q5JS37 347 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 PAMR1Q6UXH9 720 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 CERS3Q8IU89 383 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 EGFL6Q8IUX8 553 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 LRTM2Q8N967 370 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 RASGEF1AQ8N9B8 481 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 POLR3GLQ9BT43 218 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 SLC2A11Q9BYW1 496 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 SDCBP2Q9H190 292 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 GDE1Q9NZC3 331 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 RNF150Q9ULK6 438 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 POLR1AO95602 1720 aaPredicted RBP3.18□□□□□ -1.9
LINC01040-201ENST00000425048 MAPKBP1O60336 1514 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 NEDD4P46934 1319 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 IL16Q14005 1332 aa3.18□□□□□ -1.9
LINC01040-201ENST00000425048 SPATA31D1Q6ZQQ2 1576 aa3.17□□□□□ -1.9
LINC01040-201ENST00000425048 A0A1W2PPK0 400 aa3.17□□□□□ -1.9
LINC01040-201ENST00000425048 NKX6-3A6NJ46 265 aa3.17□□□□□ -1.9
LINC01040-201ENST00000425048 RPS6KA5O75582 802 aa3.17□□□□□ -1.9
LINC01040-201ENST00000425048 BAG3O95817 575 aa3.17□□□□□ -1.9
LINC01040-201ENST00000425048 GIG44P09565 113 aaPredicted RBP3.17□□□□□ -1.9
LINC01040-201ENST00000425048 SAT1P21673 171 aa3.17□□□□□ -1.9
LINC01040-201ENST00000425048 DDX10Q13206 875 aaKnown RBP3.17□□□□□ -1.9
LINC01040-201ENST00000425048 RALBP1Q15311 655 aa3.17□□□□□ -1.9
LINC01040-201ENST00000425048 DUSP28Q4G0W2 176 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms