RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FAM227AF5H4B4 570 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 H0YIG0 161 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 PGRMC1O00264 195 aaKnown RBP10.91□□□□□ -0.66
USP4-204ENST00000416417 AHSGP02765 367 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SERPIND1P05546 499 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SNRPB2P08579 225 aaKnown RBP10.91□□□□□ -0.66
USP4-204ENST00000416417 NPPBP16860 134 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 RELAQ04206 551 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SFT2D3Q587I9 215 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 ZNF766Q5HY98 468 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 CAPN13Q6MZZ7 669 aaPredicted RBP10.91□□□□□ -0.66
USP4-204ENST00000416417 TMEM207Q6UWW9 146 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 ASPGQ86U10 573 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 CTAGE6Q86UF2 777 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 CRLF3Q8IUI8 442 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 PPIL6Q8IXY8 311 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SLC35F6Q8N357 371 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SUN3Q8TAQ9 357 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 CALML6Q8TD86 181 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SLC13A3Q8WWT9 602 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 ITLN2Q8WWU7 325 aaPredicted RBP10.91□□□□□ -0.66
USP4-204ENST00000416417 RELTQ969Z4 430 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 TM4SF19Q96DZ7 209 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 PBKQ96KB5 322 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SPNS1Q9H2V7 528 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 PARVBQ9HBI1 364 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 ANKHQ9HCJ1 492 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SEC14L3Q9UDX4 400 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 MYO9AB2RTY4 2548 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 SCN3AQ9NY46 2000 aa10.91□□□□□ -0.66
USP4-204ENST00000416417 KCNE1BA0A087WTH5 132 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 CCL21O00585 134 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 OR1F1O43749 312 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 GUCA1CO95843 209 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 C8GP07360 202 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 ICAM2P13598 275 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 PGAM1P18669 254 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 TNFRSF8P28908 595 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 TUBA3CQ13748 450 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 PTK6Q13882 451 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 ABRAXAS2Q15018 415 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 PPP1R7Q15435 360 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 BBS9Q3SYG4 887 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 ACER2Q5QJU3 275 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 CATSPEREQ5SY80 951 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 PLAG1Q6DJT9 500 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 SPINK14Q6IE38 97 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 TUBA3EQ6PEY2 450 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 PAPD4Q6PIY7 484 aaKnown RBP10.9□□□□□ -0.66
USP4-204ENST00000416417 NCCRP1Q6ZVX7 275 aaPredicted RBP10.9□□□□□ -0.66
USP4-204ENST00000416417 PALM2Q8IXS6 379 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 MYO1HQ8N1T3 1032 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 KIF2BQ8N4N8 673 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 GPATCH11Q8N954 259 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 MFSD9Q8NBP5 474 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 CAMKVQ8NCB2 501 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 CFAP36Q96G28 342 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 CCDC120Q96HB5 630 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 TSNARE1Q96NA8 513 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 OR4K3Q96R72 315 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 SGPP1Q9BX95 441 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 PLAC1Q9HBJ0 212 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 LANCL2Q9NS86 450 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 TAS2R13Q9NYV9 303 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 ABI3Q9P2A4 366 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 ASIC3Q9UHC3 531 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 JRKLQ9Y4A0 524 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 COMMD10Q9Y6G5 202 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 POLEQ07864 2286 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 CPAMD8Q8IZJ3 1885 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 CNTRLQ7Z7A1 2325 aa10.9□□□□□ -0.66
USP4-204ENST00000416417 SVILO95425 2214 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 NDUFS4O43181 175 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 B4GALT2O60909 372 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 TSPAN12O95859 305 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 HRH2P25021 359 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 CD96P40200 585 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 HNF4AP41235 474 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 RGS4P49798 205 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 RHAGQ02094 409 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 ACTN3Q08043 901 aaPredicted RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 NSDHLQ15738 373 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 INAQ16352 499 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 DEFB134Q4QY38 66 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 ARMC3Q5W041 872 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 UGT3A1Q6NUS8 523 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 LCTLQ6UWM7 567 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 TICAM1Q8IUC6 712 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 LMNTD2Q8IXW0 634 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 OSBPL9Q96SU4 736 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 OLFM1Q99784 485 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 RNF32Q9H0A6 362 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 DDX47Q9H0S4 455 aaKnown RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 PPANQ9NQ55 473 aaKnown RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 ARL15Q9NXU5 204 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 TINAGQ9UJW2 476 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 ZGRF1Q86YA3 2104 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 A8MUA0 341 aa10.89□□□□□ -0.67
USP4-204ENST00000416417 DNALI1O14645 258 aaPredicted RBP10.89□□□□□ -0.67
USP4-204ENST00000416417 HNRNPRO43390 633 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms