RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HKDC1Q2TB90 917 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 PGS1Q32NB8 556 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 FAM174BQ3ZCQ3 159 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 C14orf28Q4W4Y0 310 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 PDCD4Q53EL6 469 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 FAM92BQ6ZTR7 304 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 COMMD6Q7Z4G1 85 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 RBM12BQ8IXT5 1001 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 OR4K1Q8NGD4 311 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 NCSTNQ92542 709 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SPDL1Q96EA4 605 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 AHCYL2Q96HN2 611 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 CLPTM1LQ96KA5 538 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SERPINI1Q99574 410 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SLC39A3Q9BRY0 314 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CENPKQ9BS16 269 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 RTKNQ9BST9 563 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CADM1Q9BY67 442 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 ACTL8Q9H568 366 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ERVMER34-1Q9H9K5 563 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 NDUFAF1Q9Y375 327 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 TMED5Q9Y3A6 229 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 PTPRZ1P23471 2315 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 PLXND1Q9Y4D7 1925 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 AGRPO00253 132 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 FBP2O00757 339 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 MRASO14807 208 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 GSC2O15499 205 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 KIF1CO43896 1103 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 PCDH7O60245 1069 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CTSVO60911 334 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 DNAJC8O75937 253 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 PROS1P07225 676 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ATXN8OSP0DMR3 200 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 NQO1P15559 274 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 ITGAXP20702 1163 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CNR2P34972 360 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 LSSP48449 732 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ERFP50548 548 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 OR1D5P58170 312 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ZNF33BQ06732 778 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 TBL3Q12788 808 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 HERC3Q15034 1050 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SHBQ15464 509 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SPIN4Q56A73 249 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SNAP47Q5SQN1 464 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 C6orf132Q5T0Z8 1188 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 C10orf62Q5T681 223 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 KHDRBS2Q5VWX1 349 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 REP15Q6BDI9 236 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 TCEAL6Q6IPX3 200 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ANKRD26P1Q6NSI1 321 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 KLHL35Q6PF15 583 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 FIGLAQ6QHK4 219 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 BLOC1S3Q6QNY0 202 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 RNF165Q6ZSG1 346 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 USP53Q70EK8 1073 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SLC35F3Q8IY50 421 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 DSELQ8IZU8 1212 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 RNF148Q8N7C7 305 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ARL10Q8N8L6 244 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 AVL9Q8NBF6 648 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 WDR48Q8TAF3 677 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 SLC13A3Q8WWT9 602 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 TCEAL3Q969E4 200 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CCDC124Q96CT7 223 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 ZC3H10Q96K80 434 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 TGM7Q96PF1 710 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 C17orf62Q9BQA9 187 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 REXO4Q9GZR2 422 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 ARRDC1-AS1Q9H2J1 176 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 EVA1BQ9NVM1 165 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ZIM2Q9NZV7 527 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 RUVBL1Q9Y265 456 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 ENTPD2Q9Y5L3 495 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 RNF215Q9Y6U7 377 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 TRBC2A0A5B9 178 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 FAM234BA2RU67 622 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CPED1A4D0V7 1026 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 PLPP1O14494 284 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CASC3O15234 703 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 CAPN5O15484 640 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 ERI3O43414 337 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 RASSF9O75901 435 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 TBX6O95947 436 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 PRPS2P11908 318 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 EFNA1P20827 205 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 PRPH2P23942 346 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 EPHA8P29322 1005 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 HNRNPH1P31943 449 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 CPOXP36551 454 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CAPZBP47756 277 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 ATXN3P54252 364 aaPredicted RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 RAB8AP61006 207 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 RCAN2Q14206 197 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 CAPRIN1Q14444 709 aaKnown RBP3.55□□□□□ -1.84
RTN4-208ENST00000404909 ZNF423Q2M1K9 1284 aa3.55□□□□□ -1.84
RTN4-208ENST00000404909 DEFB110Q30KQ9 67 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms