RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 VN1R5Q7Z5H4 357 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 DNERQ8NFT8 737 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 FKBP10Q96AY3 582 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 SLC38A2Q96QD8 506 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 AARSD1Q9BTE6 412 aaKnown RBP9.02□□□□□ -0.96
COL28A1-201ENST00000399429 ANGPT4Q9Y264 503 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 H3BRB1 525 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FFAR2O15552 330 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CYP17A1P05093 508 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 DRD5P21918 477 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ACSL1P33121 698 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 UGT2B10P36537 528 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 VSX2P58304 361 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 DAOAP59103 153 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 HEPACAMQ14CZ8 416 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CPZQ66K79 652 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CXXC5Q7LFL8 322 aaKnown RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 GOLGA7Q7Z5G4 137 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CCDC36Q8IYA8 594 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 BRSK1Q8TDC3 778 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SH3KBP1Q96B97 665 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 NPY6RQ99463 290 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FUZQ9BT04 418 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF416Q9BWM5 594 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SORBS1Q9BX66 1292 aaKnown RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF385DQ9H6B1 395 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SLC39A1Q9NY26 324 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 TAS2R3Q9NYW6 316 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 NUDT4Q9NZJ9 180 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CACNG4Q9UBN1 327 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SRRDQ9UH36 339 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 MUTYHQ9UIF7 546 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SCN11AQ9UI33 1791 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 IRS2Q9Y4H2 1338 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 F5H5T6 163 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 PCDHGA12O60330 932 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 OR5F1O95221 314 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 IRF1P10914 325 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ITGAMP11215 1152 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CELP19835 753 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 TYMPP19971 482 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 PIK3CBP42338 1070 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 MAGEA12P43365 314 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 NRIP1P48552 1158 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 RRAS2P62070 204 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FADDQ13158 208 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 PPIGQ13427 754 aaKnown RBP eCLIP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 DPY19L1Q2PZI1 675 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SIRPB2Q5JXA9 342 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ATG9BQ674R7 924 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FAM151BQ6UXP7 276 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF782Q6ZMW2 699 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 NLGN4XQ8N0W4 816 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 HJURPQ8NCD3 748 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 YIPF6Q96EC8 236 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 HMCESQ96FZ2 354 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CDKN2AIPNLQ96HQ2 116 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ST6GAL2Q96JF0 529 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FCRL4Q96PJ5 515 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 OR5M11Q96RB7 305 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 PARK7Q99497 189 aaKnown RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CIPCQ9C0C6 399 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 DEFB129Q9H1M3 183 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FZD8Q9H461 694 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 NIPAL2Q9H841 368 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 GORASP2Q9H8Y8 452 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 RC3H2Q9HBD1 1191 aaKnown RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 KIAA1522Q9P206 1035 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF69Q9UC07 566 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 STUB1Q9UNE7 303 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SLC16A6O15403 523 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SLC25A14O95258 325 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 HRGP04196 525 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CLTBP09497 229 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ARSBP15848 533 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 RAB3BP20337 219 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 TPMTP51580 245 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 XKP51811 444 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SMSP52788 366 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 PPP3R1P63098 170 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 INCA1Q0VD86 236 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 BAK1Q16611 211 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 VMACQ2NL98 169 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 PUS10Q3MIT2 529 aaKnown RBP9.02□□□□□ -0.97
COL28A1-201ENST00000399429 OTOP2Q7RTS6 562 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 SLAIN1Q8ND83 568 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ST8SIA4Q92187 359 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 RFT1Q96AA3 541 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ZSWIM3Q96MP5 696 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FNDC11Q9BVV2 318 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ZYG11BQ9C0D3 744 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 ATG10Q9H0Y0 220 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 MROH8Q9H579 483 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 DUSP21Q9H596 190 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 TPT1P8Q9HAU6 139 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 IFT46Q9NQC8 304 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 FKBPLQ9UIM3 349 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 TBC1D24Q9ULP9 559 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 CORO2BQ9UQ03 480 aa9.02□□□□□ -0.97
COL28A1-201ENST00000399429 KIF13AQ9H1H9 1805 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms