RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CD180Q99467 661 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 HOPXQ9BPY8 73 aaPredicted RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 GPATCH1Q9BRR8 931 aaKnown RBP9.82□□□□□ -0.84
VPS53-202ENST00000389040 CD244Q9BZW8 370 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 BRINP2Q9C0B6 783 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 IPPKQ9H8X2 491 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 RDH14Q9HBH5 336 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 WWOXQ9NZC7 414 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 PDP2Q9P2J9 529 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 FAM8A1Q9UBU6 413 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 CD300AQ9UGN4 299 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 DMXL1Q9Y485 3027 aa9.82□□□□□ -0.84
VPS53-202ENST00000389040 ADAMTS9Q9P2N4 1935 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 TRBV23OR9-2A0A075B6M9 112 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 C9JVG2 144 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 B4GAT1O43505 415 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 PEX1O43933 1283 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 FKBP9O95302 570 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 C1orf105O95561 183 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 MAP4P27816 1152 aaKnown RBP9.81□□□□□ -0.84
VPS53-202ENST00000389040 CD1CP29017 333 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 TRAP1Q12931 704 aaKnown RBP9.81□□□□□ -0.84
VPS53-202ENST00000389040 TRAF3Q13114 568 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 SPIDRQ14159 915 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 RCAN2Q14206 197 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 LRRC36Q1X8D7 754 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 ATP6AP1LQ52LC2 224 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 PDCD4Q53EL6 469 aaKnown RBP9.81□□□□□ -0.84
VPS53-202ENST00000389040 CDKL4Q5MAI5 379 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 C6orf136Q5SQH8 315 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 PERM1Q5SV97 790 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 CDCP2Q5VXM1 449 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 METTL2BQ6P1Q9 378 aaKnown RBP9.81□□□□□ -0.84
VPS53-202ENST00000389040 ERMP1Q7Z2K6 904 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 DGLUCYQ7Z3D6 616 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 SPATA24Q86W54 205 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 VRK3Q8IV63 474 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 OR4D9Q8NGE8 314 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 MCOLN3Q8TDD5 553 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 TSPEARQ8WU66 669 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 LCN9Q8WX39 176 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 SLC22A18Q96BI1 424 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 TMEM74Q96NL1 305 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 DEPDC7Q96QD5 511 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 SLC39A3Q9BRY0 314 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 TMEM79Q9BSE2 394 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 C1orf50Q9BV19 199 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 SLC12A9Q9BXP2 914 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 TRIM54Q9BYV2 358 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 PCDHAC1Q9H158 963 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 SPATA7Q9P0W8 599 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 MAP10Q9P2G4 905 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 OPTCQ9UBM4 332 aa9.81□□□□□ -0.84
VPS53-202ENST00000389040 TMEM131Q92545 1883 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ANKRD12Q6UB98 2062 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ASCC3Q8N3C0 2202 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 SPAARA0A1B0GVQ0 90 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 A0A1W2PP18 115 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 KATNA1O75449 491 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 SLC22A3O75751 556 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 HIST1H2AGP0C0S8 130 aaPredicted RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 AMD1P17707 334 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 HIST1H2ADP20671 130 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 CYP2A7P20853 494 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 CAPZBP47756 277 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 RAB28P51157 221 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 AP1S2P56377 157 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 KCNK10P57789 538 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 MRPS35P82673 323 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 INSM1Q01101 510 aaPredicted RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 ABRQ12979 859 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 EIF3IQ13347 325 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 PLCL1Q15111 1095 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 OGFRL1Q5TC84 451 aaPredicted RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 TMEM71Q6P5X7 295 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 RBM44Q6ZP01 1051 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 Q6ZSR9 355 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 MILR1Q7Z6M3 343 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 AMIGO1Q86WK6 493 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 OOSP2Q86WS3 158 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 TMEM126BQ8IUX1 230 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 FNDC5Q8NAU1 212 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 SPDL1Q96EA4 605 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 HIST1H2AHQ96KK5 128 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 LRGUKQ96M69 825 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 HIST1H2AJQ99878 128 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 H2AFJQ9BTM1 129 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 TWSG1Q9GZX9 223 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 SRMSQ9H3Y6 488 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 IL1RL2Q9HB29 575 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 PARVBQ9HBI1 364 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 SLC52A3Q9NQ40 469 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 TMEM45AQ9NWC5 275 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 GID8Q9NWU2 228 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ZIM2Q9NZV7 527 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ABCD2Q9UBJ2 740 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 ANGPTL3Q9Y5C1 460 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 A0A1W2PQM1 296 aa9.8□□□□□ -0.84
VPS53-202ENST00000389040 PABPN1LA6NDY0 278 aaKnown RBP9.8□□□□□ -0.84
VPS53-202ENST00000389040 K7EPI3 171 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms