RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 GPR50Q13585 617 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 TIMM50Q3ZCQ8 353 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 MFSD14CQ5VZR4 134 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 RTN4RL1Q86UN2 441 aaPredicted RBP20.4■□□□□ 0.86
UPF3A-202ENST00000375299 ASCC1Q8N9N2 400 aaKnown RBP20.4■□□□□ 0.86
UPF3A-202ENST00000375299 FLCNQ8NFG4 579 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 SETD6Q8TBK2 473 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 SPPL2AQ8TCT8 520 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 OR2A14Q96R47 310 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 CCM2Q9BSQ5 444 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 RLIMQ9NVW2 624 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 CRNNQ9UBG3 495 aaPredicted RBP20.4■□□□□ 0.86
UPF3A-202ENST00000375299 SNX8Q9Y5X2 465 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 FRMPD3Q5JV73 1810 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 A0A075B6Q4 140 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 SERTM1A2A2V5 107 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 SLC38A8A6NNN8 435 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 SCO2O43819 266 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 TIE1P35590 1138 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 CHRNA6Q15825 494 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 TRIM71Q2Q1W2 868 aaKnown RBP20.39■□□□□ 0.86
UPF3A-202ENST00000375299 NXNL2Q5VZ03 156 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 FRG2Q64ET8 278 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 C19orf48Q6RUI8 117 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 TMC5Q6UXY8 1006 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 UBE2R2Q712K3 238 aaPredicted RBP20.39■□□□□ 0.86
UPF3A-202ENST00000375299 GATAD2AQ86YP4 633 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 RNF175Q8N4F7 328 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 UTP15Q8TED0 518 aaKnown RBP20.39■□□□□ 0.86
UPF3A-202ENST00000375299 FRG2BQ96QU4 278 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 CWH43Q9H720 699 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 TRPV5Q9NQA5 729 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 TAS2R16Q9NYV7 291 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 NDUFAF4Q9P032 175 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 DUSP12Q9UNI6 340 aa20.39■□□□□ 0.86
UPF3A-202ENST00000375299 YY2O15391 372 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 SEPT4O43236 478 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 SLITRK5O94991 958 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 CORO1AP31146 461 aaKnown RBP20.39■□□□□ 0.85
UPF3A-202ENST00000375299 ZXDBP98169 803 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 TSTQ16762 297 aaKnown RBP20.39■□□□□ 0.85
UPF3A-202ENST00000375299 ZFP69Q49AA0 526 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 FAM26DQ5JW98 314 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 NRARPQ7Z6K4 114 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 RAVER1Q8IY67 606 aaKnown RBP20.39■□□□□ 0.85
UPF3A-202ENST00000375299 OR8H2Q8N162 312 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 ST13P5Q8NFI4 369 aaPredicted RBP20.39■□□□□ 0.85
UPF3A-202ENST00000375299 OR4C15Q8NGM1 316 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 NIPSNAP1Q9BPW8 284 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 MS4A12Q9NXJ0 267 aa20.39■□□□□ 0.85
UPF3A-202ENST00000375299 TBKBP1A7MCY6 615 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 UPK3BL1B0FP48 263 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 UPK3BL2E5RIL1 263 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 BPIP17213 487 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 PCGF2P35227 344 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 DDOSTP39656 456 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 SLC6A12P48065 614 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 MRPS15P82914 257 aaKnown RBP20.38■□□□□ 0.85
UPF3A-202ENST00000375299 B3GNT7Q8NFL0 401 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 CDC26Q8NHZ8 85 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 OR5M11Q96RB7 305 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 SMURF1Q9HCE7 757 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 IMPAD1Q9NX62 359 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 TBC1D14Q9P2M4 693 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 AP3D1O14617 1153 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 PRAMEF4O60810 478 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 CLDN7O95471 211 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 LAMP1P11279 417 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 PTX3P26022 381 aaPredicted RBP20.38■□□□□ 0.85
UPF3A-202ENST00000375299 AOAHP28039 575 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 DUSP4Q13115 394 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 GPR17Q13304 367 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 MED22Q15528 200 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 HKDC1Q2TB90 917 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 PRAMEF9Q5VWM5 478 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 ZNF517Q6ZMY9 492 aaPredicted RBP20.38■□□□□ 0.85
UPF3A-202ENST00000375299 ATCAYQ86WG3 371 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 LGI4Q8N135 537 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 NXPE1Q8N323 547 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 CHTF18Q8WVB6 975 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 MAL2Q969L2 176 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 SH3KBP1Q96B97 665 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 ST6GAL2Q96JF0 529 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 MGLLQ99685 303 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 TAS2R9Q9NYW1 312 aa20.38■□□□□ 0.85
UPF3A-202ENST00000375299 CFAP20Q9Y6A4 193 aaKnown RBP20.38■□□□□ 0.85
UPF3A-202ENST00000375299 CCRL2O00421 344 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 NDUFB5O43674 189 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 CD72P21854 359 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 MZF1P28698 734 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-202ENST00000375299 TNFSF8P32971 234 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 SELENOWP63302 87 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 SPIBQ01892 262 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 TP53BP2Q13625 1128 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 CDK10Q15131 360 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 PTCHD3Q3KNS1 767 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 PLD4Q96BZ4 506 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 NEDD4LQ96PU5 975 aa20.37■□□□□ 0.85
UPF3A-202ENST00000375299 FAM193BQ96PV7 902 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-202ENST00000375299 CDCA4Q9BXL8 241 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms