RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 NPLQ9BXD5 320 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 TRIT1Q9H3H1 467 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 PCDHB3Q9Y5E6 796 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 CFAP20Q9Y6A4 193 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 VPS13AQ96RL7 3174 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 ASPDHA6ND91 283 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 CDH1P12830 882 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 NCK1P16333 377 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 EPORP19235 508 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 ITPKAP23677 461 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 ZFP36L2P47974 494 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 FXNQ16595 210 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 TIGD2Q4W5G0 525 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 GLYATQ6IB77 296 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 TSSK4Q6SA08 328 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 ABI3BPQ7Z7G0 1075 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 THOC6Q86W42 341 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 ZFAND4Q86XD8 727 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 OR5K2Q8NHB8 316 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 PPP1R14BQ96C90 147 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 TEX37Q96LM6 180 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 CHID1Q9BWS9 393 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 PCED1AQ9H1Q7 454 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 CXorf21Q9HAI6 301 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 TRPS1Q9UHF7 1281 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 ZNF639Q9UID6 485 aa12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 TDRKHQ9Y2W6 561 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-201ENST00000360718 THADAQ6YHU6 1953 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 A0A1W2PPC4 97 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 PDZK1P1A8MUH7 402 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 ALBP02768 609 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 BCKDHBP21953 392 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 IMPA1P29218 277 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 KRT33BQ14525 404 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 CCNYL2Q5T2Q4 361 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 CAPN13Q6MZZ7 669 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 FKBP9P1Q75LS8 142 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 KIAA2013Q8IYS2 634 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 RAB42Q8N4Z0 105 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 OR5AR1Q8NGP9 310 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 OR56A3Q8NH54 315 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 CCL4L1Q8NHW4 92 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 PROKR1Q8TCW9 393 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 MIPOL1Q8TD10 442 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 C12orf43Q96C57 262 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 VPS50Q96JG6 964 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 C12orf66Q96MD2 445 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 RNF145Q96MT1 663 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 SEPHS2Q99611 448 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 TUBA1CQ9BQE3 449 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 C1orf50Q9BV19 199 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 CHCHD3Q9NX63 227 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 WDFY4Q6ZS81 3184 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 TP53BP1Q12888 1972 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 A0A0J9YVX5 310 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 NOL3O60936 208 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 DEAF1O75398 565 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 MAOBP27338 520 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 HSD17B2P37059 387 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 HALP42357 657 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 EMP3P54852 163 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 SRP54P61011 504 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 FAM98BQ52LJ0 330 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 CYBRD1Q53TN4 286 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 DUS1LQ6P1R4 473 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 SCIMPQ6UWF3 145 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 KLHDC8AQ8IYD2 350 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 OR2T11Q8NH01 316 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 ZNF480Q8WV37 535 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 CNDP2Q96KP4 475 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 SLC6A18Q96N87 628 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 TMEM74Q96NL1 305 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 FERD3LQ96RJ6 166 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 SLC29A3Q9BZD2 475 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 LIN28AQ9H9Z2 209 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 AASDHPPTQ9NRN7 309 aa12.67□□□□□ -0.38
SQSTM1-201ENST00000360718 KRT6AP02538 564 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 KRT6BP04259 564 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 AK4P27144 223 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 KRT6CP48668 564 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 PNLIPRP1P54315 467 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 YBX1P67809 324 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 SIGLEC14Q08ET2 396 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 TSTA3Q13630 321 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 ALG11Q2TAA5 492 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 USP39Q53GS9 565 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 IL27RAQ6UWB1 636 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 USP51Q70EK9 711 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 CADM4Q8NFZ8 388 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 FBXL20Q96IG2 436 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 TRIM8Q9BZR9 551 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 RPF2Q9H7B2 306 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 INTS7Q9NVH2 962 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 KLF15Q9UIH9 416 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 HEBP2Q9Y5Z4 205 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 KCNE2Q9Y6J6 123 aa12.66□□□□□ -0.38
SQSTM1-201ENST00000360718 METTL12A8MUP2 240 aa12.65□□□□□ -0.38
SQSTM1-201ENST00000360718 AXIN1O15169 862 aa12.65□□□□□ -0.38
SQSTM1-201ENST00000360718 KDM1AO60341 852 aa12.65□□□□□ -0.38
SQSTM1-201ENST00000360718 UGDHO60701 494 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms