RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 BLOC1S6Q9UL45 172 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 PCM1Q15154 2024 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 FOXE1O00358 373 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 FKBP9O95302 570 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 PAPLNO95428 1278 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 C1GALT1C1LP0DN25 315 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 ARHGDIAP52565 204 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 CRYBA2P53672 197 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 TMBIM6P55061 237 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 PIGFQ07326 219 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 ELP6Q0PNE2 266 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 RAPSNQ13702 412 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 SLBPQ14493 270 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 STARD3Q14849 445 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 RGNQ15493 299 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 KDM4DQ6B0I6 523 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 GTF2IRD2BQ6EKJ0 949 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 GTF2IRD2Q86UP8 949 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 LAS2Q8IYD9 372 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 LRRC56Q8IYG6 542 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 DRAXINQ8NBI3 349 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 ZFYVE19Q96K21 471 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 TRIM39Q9HCM9 518 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 BAG5Q9UL15 447 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 DYRK1BQ9Y463 629 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 LINC01553A4QN01 128 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 OTOL1A6NHN0 477 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 SLC1A7O00341 560 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 ZNF8P17098 575 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 FPR1P21462 350 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 PPIBP23284 216 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 TAP2Q03519 686 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 CDK5R2Q13319 367 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 ZNF385BQ569K4 471 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 PDE12Q6L8Q7 609 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 ARMCX6Q7L4S7 300 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 OR8D1Q8WZ84 308 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 NRBF2Q96F24 287 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 EFCAB11Q9BUY7 163 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 TRIT1Q9H3H1 467 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 SIRT5Q9NXA8 310 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 ATP6V1HQ9UI12 483 aa20.04■□□□□ 0.8
CCDC88B-203ENST00000359902 RNASET2O00584 256 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 POP7O75817 140 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 ABCB1P08183 1280 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 ADRB3P13945 408 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 FPGSQ05932 587 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 GAB4Q2WGN9 574 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 IQCCQ4KMZ1 466 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 PIWIL3Q7Z3Z3 882 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 TRMT11Q7Z4G4 463 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 MAL2Q969L2 176 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 LINC00615Q96LM1 132 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 FAM129BQ96TA1 746 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 ASPSCR1Q9BZE9 553 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 PAK1IP1Q9NWT1 392 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 VPS4AQ9UN37 437 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 CORO2BQ9UQ03 480 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 EDDM13A0A1B0GTR0 161 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 PIPSLA2A3N6 862 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 LZTS3O60299 673 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 UGT2B11O75310 529 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 GBAP04062 536 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 NTRK1P04629 796 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 DPTQ07507 201 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 COMMD6Q7Z4G1 85 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 SFTPA1Q8IWL2 248 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 NAGSQ8N159 534 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 BPIFB6Q8NFQ5 453 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 OR4A15Q8NGL6 344 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 CNIH3Q8TBE1 160 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 CXorf40BQ96DE9 158 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 REEP4Q9H6H4 257 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 DMRT3Q9NQL9 472 aa20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 PDP1Q9P0J1 537 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 TCF20Q9UGU0 1960 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-203ENST00000359902 TGFB1P01137 390 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 CD247P20963 164 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 ACADLP28330 430 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 CLK3P49761 638 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 CCR3P51677 355 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 MAPK10P53779 464 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 ZNF763Q0D2J5 394 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 SIM2Q14190 667 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 C10orf62Q5T681 223 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 HORMAD1Q86X24 394 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 ARMC5Q96C12 935 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 TPD52L3Q96J77 140 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 MAGED4Q96JG8 741 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 C7orf34Q96L11 122 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 BHLHE41Q9C0J9 482 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 SPNS1Q9H2V7 528 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 RIBC2Q9H4K1 309 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 EHD1Q9H4M9 534 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 ITM2CQ9NQX7 267 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 NAALAD2Q9Y3Q0 740 aa20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 SAMHD1Q9Y3Z3 626 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-203ENST00000359902 C17orf113A0A1B0GUU1 675 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms