RNA–Protein interactions for RNA: ENST00000356162.5

CNOT4-202, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 5 BASIC

Gene CNOT4, Length 2,594 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-202ENST00000356162 NLNQ9BYT8 704 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ROPN1BQ9BZX4 212 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 UNKQ9C0B0 810 aaKnown RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 PITHD1Q9GZP4 211 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 MRPL46Q9H2W6 279 aaKnown RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 EHD1Q9H4M9 534 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ROPN1Q9HAT0 212 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 IRAK4Q9NWZ3 460 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 MKS1Q9NXB0 559 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 XPR1Q9UBH6 696 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SH2B3Q9UQQ2 575 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 PCDHGA6Q9Y5G7 932 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ANKRD12Q6UB98 2062 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 KCNE1BA0A087WTH5 132 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 A0A0J9YVX5 310 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 A0A1B0GX78 115 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NCF1BA6NI72 391 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ZNF891A8MT65 544 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NCF1CA8MVU1 366 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 C9J4A7 227 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 H0YGG7 62 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 STX16-NPEPL1H3BU86 382 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 STX16O14662 325 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CLGNO14967 610 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 TAPBPO15533 448 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ZNF749O43361 778 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 STK16O75716 305 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ONECUT2O95948 504 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 GFAPP14136 432 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NCF1P14598 390 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NPPBP16860 134 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 AGXTP21549 392 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CXCR2P25025 360 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SOX18P35713 384 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 HSPA7P48741 367 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ALDH18A1P54886 795 aaKnown RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 VSX2P58304 361 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ARF3P61204 181 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NFKB2Q00653 900 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 MC1RQ01726 317 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 TLE3Q04726 772 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 PCDH1Q08174 1060 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 IFFO1Q0D2I5 559 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 GPS2Q13227 327 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 LAPTM5Q13571 262 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 DNASE1L3Q13609 305 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 MDC1Q14676 2089 aaKnown RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 PCBP2Q15366 365 aaKnown RBP eCLIP3.79□□□□□ -1.87e-8■■■■□ 21.7
CNOT4-202ENST00000356162 PDK4Q16654 411 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NDUFA9Q16795 377 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ZXDCQ2QGD7 858 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ATG9BQ674R7 924 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NXPE4Q6UWF7 544 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 WDR87Q6ZQQ6 2873 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 TIPARPQ7Z3E1 657 aaKnown RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CROCCP2Q86T23 111 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 KRT78Q8N1N4 520 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 PLD6Q8N2A8 252 aaKnown RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SPATA6LQ8N4H0 392 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 IL22RA1Q8N6P7 574 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ZNF655Q8N720 491 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CSNK1A1LQ8N752 337 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SNX31Q8N9S9 440 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CAMKVQ8NCB2 501 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 TTLQ8NG68 377 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 OR4K1Q8NGD4 311 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CT55Q8WUE5 264 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 FKBP10Q96AY3 582 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 PYCR2Q96C36 320 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 WDR34Q96EX3 536 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 MVB12AQ96EY5 273 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SEC16BQ96JE7 1060 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 C10orf90Q96M02 699 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CCNL2Q96S94 520 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NDC1Q9BTX1 674 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SLC7A5P2Q9GIP4 190 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SPRTNQ9H040 489 aaPredicted RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NT5DC2Q9H857 520 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 LHX9Q9NQ69 397 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 TPSG1Q9NRR2 321 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CUTCQ9NTM9 273 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 TXLNGQ9NUQ3 528 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 ABCF3Q9NUQ8 709 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 COPG2Q9UBF2 871 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 OPTCQ9UBM4 332 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 MID2Q9UJV3 735 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 CROTQ9UKG9 612 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 TNPO3Q9Y5L0 923 aaKnown RBP3.79□□□□□ -1.8
CNOT4-202ENST00000356162 NCOR2Q9Y618 2525 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 KCNE2Q9Y6J6 123 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 SPTBN2O15020 2390 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 KNTC1P50748 2209 aa3.79□□□□□ -1.8
CNOT4-202ENST00000356162 LOC101059948A0A1B0GTJ6 334 aa3.78□□□□□ -1.8
CNOT4-202ENST00000356162 CCDC151A5D8V7 595 aa3.78□□□□□ -1.8
CNOT4-202ENST00000356162 SMIM23A6NLE4 172 aa3.78□□□□□ -1.8
CNOT4-202ENST00000356162 H7BY64 318 aa3.78□□□□□ -1.8
CNOT4-202ENST00000356162 K7EPI3 171 aa3.78□□□□□ -1.8
CNOT4-202ENST00000356162 KLK10O43240 276 aa3.78□□□□□ -1.8
CNOT4-202ENST00000356162 HCRTR1O43613 425 aa3.78□□□□□ -1.8
CNOT4-202ENST00000356162 NRP2O60462 931 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms