RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 MANSC4A6NHS7 340 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 CDRT1O95170 752 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 IL32P24001 234 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 NKX6-1P78426 367 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 MRPS10P82664 201 aaKnown RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 GLT8D1Q68CQ7 371 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 ZBTB46Q86UZ6 589 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 TSPYL5Q86VY4 417 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 NAT8LQ8N9F0 302 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 OR51V1Q9H2C8 321 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 FAM83DQ9H4H8 585 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 NUP188Q5SRE5 1749 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 BLKP51451 505 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 EN1Q05925 392 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 RAB39AQ14964 217 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 SVBPQ8N300 66 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 SYNPOQ8N3V7 929 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 NKD1Q969G9 470 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 SLIT2O94813 1529 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 FAM149AA5PLN7 773 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 SPTLC1O15269 473 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 CREG1O75629 220 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 SNAPINO95295 136 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 RBMXP38159 391 aaKnown RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 INHBEP58166 350 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 PUS10Q3MIT2 529 aaKnown RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 SCGB2B2Q4G0G5 96 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 PTPN20Q4JDL3 420 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 ATAT1Q5SQI0 421 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 PRSS48Q7RTY5 328 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 ZNF675Q8TD23 568 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 ACDQ96AP0 544 aa12.94□□□□□ -0.34
COL6A3-202ENST00000347401 SAV1Q9H4B6 383 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-202ENST00000347401 YDJCA8MPS7 323 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 ZNF705EA8MWA4 302 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 SCDO00767 359 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 ETFAP13804 333 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 HLCSP50747 726 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 S100A10P60903 97 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 NAE1Q13564 534 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 IKBKEQ14164 716 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 BTG3Q14201 252 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 EIF4HQ15056 248 aaKnown RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TMEM69Q5SWH9 247 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 MARCH9Q86YJ5 346 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 HCAR2Q8TDS4 363 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 FCRL5Q96RD9 977 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TSPAN3O60637 253 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 BANF1O75531 89 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 IFNA5P01569 189 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 H2AFB2P0C5Z0 115 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 CD79BP40259 229 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 EIF2DP41214 584 aaKnown RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TRAM2Q15035 370 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TSTQ16762 297 aaKnown RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 PAN2Q504Q3 1202 aaKnown RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 PAOXQ6QHF9 649 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TPGS1Q6ZTW0 290 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 HS3ST5Q8IZT8 346 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 DERL2Q9GZP9 239 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 RHBGQ9H310 441 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 LAMP5Q9UJQ1 280 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 FAM186AA6NE01 2351 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 SULT1B1O43704 296 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 EPOP01588 193 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 HTR2BP41595 481 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TCEAL1Q15170 157 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TGFBIQ15582 683 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 PROX2Q3B8N5 592 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 GPR22Q99680 433 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 RSPH9Q9H1X1 276 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 CHRAC1Q9NRG0 131 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 ARMC1Q9NVT9 282 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 SIRPGQ9P1W8 387 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 SH2B3Q9UQQ2 575 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 C17orf113A0A1B0GUU1 675 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 GRXCR2A6NFK2 248 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 PCDH7O60245 1069 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 HOXB9P17482 250 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 C1QTNF8P60827 252 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 AKR1C8PQ5T2L2 129 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 MRPL41Q8IXM3 137 aaKnown RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 BEST3Q8N1M1 668 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 YIPF7Q8N8F6 280 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TMEM246Q9BRR3 403 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 TOR3AQ9H497 397 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 ERVK-19Q9WJR5 959 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 PHRF1Q9P1Y6 1649 aaKnown RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 CPSF4LA6NMK7 179 aaKnown RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 KRBOX1C9JBD0 128 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 ABCG1P45844 678 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 VEGFCP49767 419 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 ZNF101Q8IZC7 436 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 MS4A15Q8N5U1 240 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 PCDHB11Q9Y5F2 797 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 HTRA2O43464 458 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 MFSD11O43934 449 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 SLC6A6P31641 620 aa12.93□□□□□ -0.34
COL6A3-202ENST00000347401 PUM1Q14671 1186 aaKnown RBP eCLIP12.93□□□□□ -0.34
COL6A3-202ENST00000347401 FAM199XQ6PEV8 388 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms