RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FAM163BP0C2L3 166 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 TYRP14679 529 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 CSF2RAP15509 400 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 MOGQ16653 247 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 WASH2PQ6VEQ5 465 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 PIH1D2Q8WWB5 315 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 DNAJA3Q96EY1 480 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 NTN4Q9HB63 628 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 RPRD1BQ9NQG5 326 aaKnown RBP11.54□□□□□ -0.56
USP1-201ENST00000339950 ERVK13-1Q9NX77 482 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 RP1P56715 2156 aa11.54□□□□□ -0.56
USP1-201ENST00000339950 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 H3BSH0 61 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 SLC28A2O43868 658 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 HLA-FP30511 346 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 HPCAL1P37235 193 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 RPS7P62081 194 aaKnown RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 GALNT1Q10472 559 aaPredicted RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 ZNF852Q6ZMS4 543 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 TPRG1Q6ZUI0 275 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 SPATC1Q76KD6 591 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 ZNF551Q7Z340 670 aaPredicted RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 SLC5A8Q8N695 610 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 PLD4Q96BZ4 506 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 MRPS7Q9Y2R9 242 aaKnown RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 EFCAB10A6NFE3 127 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 SEMA3DO95025 777 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 SLC10A3P09131 477 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 ZC3H12BQ5HYM0 836 aaKnown RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 DDI2Q5TDH0 399 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 C22orf39Q6P5X5 142 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 HSD11B1LQ7Z5J1 315 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 MMAAQ8IVH4 418 aaKnown RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 C11orf65Q8NCR3 313 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 KREMEN2Q8NCW0 462 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 OR9Q1Q8NGQ5 310 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 TBX5Q99593 518 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 PRR14Q9BWN1 585 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 LEFTY2O00292 366 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 DLGAP1O14490 977 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 FRS3O43559 492 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 ERN1O75460 977 aaKnown RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 PCCBP05166 539 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 BCHEP06276 602 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 NR2F1P10589 423 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 LHCGRP22888 699 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 POLR2LP62875 67 aaKnown RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 VMACQ2NL98 169 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 DEFB115Q30KQ5 88 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 MPPE1Q53F39 396 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 DCDC5Q6ZRR9 648 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 IQCF1Q8N6M8 205 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 ZNF548Q8NEK5 533 aaPredicted RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 LGALS12Q96DT0 336 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 TRIB3Q96RU7 358 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 EMILIN2Q9BXX0 1053 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 OR51E2Q9H255 320 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 KCNK12Q9HB15 430 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 TIGARQ9NQ88 270 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 MRPS23Q9Y3D9 190 aaKnown RBP11.53□□□□□ -0.56
USP1-201ENST00000339950 PIKFYVEQ9Y2I7 2098 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 CDH23Q9H251 3354 aa11.53□□□□□ -0.56
USP1-201ENST00000339950 HTR3EA5X5Y0 456 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 RFXAPO00287 272 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 EBLN1P0CF75 366 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 PABPC1P11940 636 aaKnown RBP11.52□□□□□ -0.56
USP1-201ENST00000339950 SRCP12931 536 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 EIF3MQ7L2H7 374 aaKnown RBP11.52□□□□□ -0.56
USP1-201ENST00000339950 HUS1BQ8NHY5 278 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 C1GALT1C1Q96EU7 318 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 THG1LQ9NWX6 298 aaKnown RBP11.52□□□□□ -0.56
USP1-201ENST00000339950 TUBA8Q9NY65 449 aaPredicted RBP11.52□□□□□ -0.56
USP1-201ENST00000339950 FBXW2Q9UKT8 454 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 PPT2Q9UMR5 302 aa11.52□□□□□ -0.56
USP1-201ENST00000339950 WASH4PA8MWX3 477 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 GMFGO60234 142 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 TCEA1P23193 301 aaKnown RBP11.52□□□□□ -0.57
USP1-201ENST00000339950 GADD45AP24522 165 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 IDUAP35475 653 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 VIPR2P41587 438 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 AQP6Q13520 282 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 CLCA4Q14CN2 919 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 TSTQ16762 297 aaKnown RBP11.52□□□□□ -0.57
USP1-201ENST00000339950 GPAT3Q53EU6 434 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 ARMCX4Q5H9R4 360 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 CASP12Q6UXS9 341 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 GPR150Q8NGU9 434 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 COL21A1Q96P44 957 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 ABCD2Q9UBJ2 740 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 A0A0C4DFX4 3053 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 ZNF646O15015 1829 aaPredicted RBP11.52□□□□□ -0.57
USP1-201ENST00000339950 LOC110117498-PIK3R3F6TDL0 507 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 H7BY64 318 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 AP2A2O94973 939 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 GDPD4Q6W3E5 623 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 GRASPQ7Z6J2 395 aaPredicted RBP11.52□□□□□ -0.57
USP1-201ENST00000339950 SVOPQ8N4V2 548 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 SCAIQ8N9R8 606 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 DCAF4L2Q8NA75 395 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 PRAP1Q96NZ9 151 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms