RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DUXAA6NLW8 204 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 INPPL1O15357 1258 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 MATN1P21941 496 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 RPL19P84098 196 aaKnown RBP12.27□□□□□ -0.45
SDC3-201ENST00000336798 NPTX1Q15818 432 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 PLEKHG6Q3KR16 790 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 FIP1L1Q6UN15 594 aaKnown RBP12.27□□□□□ -0.45
SDC3-201ENST00000336798 PLCZ1Q86YW0 608 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 TOR1AIP2Q8NFQ8 470 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 AKTIPQ9H8T0 292 aa12.27□□□□□ -0.45
SDC3-201ENST00000336798 ILVBLA1L0T0 632 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 OR6C70A6NIJ9 312 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 ZNF670-ZNF695F2Z2N8 137 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 GHRHRQ02643 423 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 GRIK2Q13002 908 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 AQP11Q8NBQ7 271 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 DCAKDQ8WVC6 231 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 CADM1Q9BY67 442 aaKnown RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 FLRT1Q9NZU1 646 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 SALL4Q9UJQ4 1053 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 C14orf166Q9Y224 244 aaKnown RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 NOP16Q9Y3C1 178 aaKnown RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 CLDN25C9JDP6 229 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 PTPRCAPQ14761 206 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 ATXN7L3Q14CW9 347 aaPredicted RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 DECR1Q16698 335 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 SAMD14Q8IZD0 417 aaPredicted RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 C4orf32Q8N8J7 132 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 TMEM41AQ96HV5 264 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 ASPNQ9BXN1 380 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 CYP8B1Q9UNU6 501 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 TLL2Q9Y6L7 1015 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 PLSCR1O15162 318 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 ACOX3O15254 700 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 GP1BBP13224 206 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 HTR7P34969 479 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 PREPP48147 710 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 FXYD6P3P58550 94 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 UGT8Q16880 541 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 XKRXQ6PP77 449 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 KCTD7Q96MP8 289 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 STOX2Q9P2F5 926 aaPredicted RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 LOC730098B7Z3J9 87 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 SLC7A4O43246 635 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 CHRNA1P02708 482 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 BNIP3Q12983 259 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 GRK1Q15835 563 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 NNATQ16517 81 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 LRRC66Q68CR7 880 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 DHX33Q9H6R0 707 aaKnown RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 CRTAC1Q9NQ79 661 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 POU2F3Q9UKI9 436 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 KCTD3Q9Y597 815 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 ELOAQ14241 798 aaKnown RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 RBM39Q14498 530 aaKnown RBP12.26□□□□□ -0.45
SDC3-201ENST00000336798 FBXL22Q6P050 247 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 GALNT10Q86SR1 603 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 CLDN19Q8N6F1 224 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 TTLQ8NG68 377 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 NINJ1Q92982 152 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 CMTM7Q96FZ5 175 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 RNF39Q9H2S5 420 aa12.26□□□□□ -0.45
SDC3-201ENST00000336798 H1F0P07305 194 aaKnown RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 ADH7P40394 386 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 CDK10Q15131 360 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 VTCN1Q7Z7D3 282 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 PDPRQ8NCN5 879 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 SGIP1Q9BQI5 828 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 MND1Q9BWT6 205 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 XKR8Q9H6D3 395 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 C14orf105Q9NVL8 296 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 GALPQ9UBC7 116 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 ABCD2Q9UBJ2 740 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 ROBO3Q96MS0 1386 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 PRKD3O94806 890 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 LYPLA2O95372 231 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 RPS3AP61247 264 aaKnown RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 GKN2Q86XP6 184 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 WFIKKN2Q8TEU8 576 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 TMEM68Q96MH6 324 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 KCNA7Q96RP8 456 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 BCO2Q9BYV7 579 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 ZNF395Q9H8N7 513 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 Q9N2J8 555 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 POMPQ9Y244 141 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 BOLA2-SMG1P6H3BVE0 249 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 I3L521 148 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 C6orf47O95873 294 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 TYRP14679 529 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 HOXB6P17509 224 aaKnown RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 PTX3P26022 381 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 CD40LGP29965 261 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 JAM2P57087 298 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 UFM1P61960 85 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 INAVAQ3KP66 663 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 LRRC37A5PQ49AS3 106 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 ARSKQ6UWY0 536 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 NLGN4YQ8NFZ3 816 aaPredicted RBP12.25□□□□□ -0.45
SDC3-201ENST00000336798 FZD3Q9NPG1 666 aa12.25□□□□□ -0.45
SDC3-201ENST00000336798 LAMP5Q9UJQ1 280 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms