RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ANKRD60Q9BZ19 345 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 FARSBQ9NSD9 589 aaKnown RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 ABCB8Q9NUT2 735 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SOHLH2Q9NX45 425 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 HCN3Q9P1Z3 774 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 RABL2AQ9UBK7 228 aaPredicted RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 TNFRSF10DQ9UBN6 386 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 CLCA3PQ9Y6N3 262 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 H3BMQ9 156 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 J3KR12 359 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 PRKACAP17612 351 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 TCEA1P23193 301 aaKnown RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 PSMD8P48556 350 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SMSP52788 366 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 PPP3R1P63098 170 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 HSPB3Q12988 150 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 OCLNQ16625 522 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 PLA2G4EQ3MJ16 856 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 CDHR3Q6ZTQ4 885 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 GALNTL5Q7Z4T8 443 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 RFT1Q96AA3 541 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 TMIGD2Q96BF3 282 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SCRN2Q96FV2 425 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 HYLS1Q96M11 299 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 COG8Q96MW5 612 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 LGR4Q9BXB1 951 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SLC28A3Q9HAS3 691 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 FBRSL1Q9HCM7 1045 aaKnown RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 PCDHGB7Q9Y5F8 929 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 E7ESA3 106 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SOCS2O14508 198 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SDHDO14521 159 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SLC19A2O60779 497 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 H1F0P07305 194 aaKnown RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 EPCAMP16422 314 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 RFC2P35250 354 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 CLCA4Q14CN2 919 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SIRPB2Q5JXA9 342 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 WDR45BQ5MNZ6 344 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 LRRC66Q68CR7 880 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 ARL9Q6T311 187 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SNX20Q7Z614 316 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 SDR16C5Q8N3Y7 309 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 LINC00471Q8N535 108 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 DNASE1L2Q92874 299 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 C14orf105Q9NVL8 296 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 RBM7Q9Y580 266 aaKnown RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 IGKV6D-21A0A0A0MT36 114 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 XKRYO14609 159 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 SCN2BO60939 215 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 DIRAS1O95057 198 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 SRPRAP08240 638 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 CCND3P30281 292 aaPredicted RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 DGKGP49619 791 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 KCNQ1P51787 676 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 NFKB2Q00653 900 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 ST3GAL4Q11206 333 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 GPR17Q13304 367 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 VMACQ2NL98 169 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 C11orf91Q3C1V1 193 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 PNCKQ6P2M8 343 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 FAM124AQ86V42 546 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 CAND1Q86VP6 1230 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 TIGD4Q8IY51 512 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 ZNF366Q8N895 744 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 OR13J1Q8NGT2 312 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 OR5J2Q8NH18 312 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 SLC35G5Q96KT7 338 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 STRA6Q9BX79 667 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 TRIM36Q9NQ86 728 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 TAS2R3Q9NYW6 316 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 GALPQ9UBC7 116 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 PCDHB3Q9Y5E6 796 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 MYH3P11055 1940 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 IGKV6-21A0A0C4DH24 114 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 A0A1W2PRQ8 180 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 APOC3P02656 99 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 OPN1SWP03999 348 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 HTR1EP28566 365 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 ACVRL1P37023 503 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 WASP42768 502 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 MAN2A2P49641 1150 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 CDKL1Q00532 357 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 DUOXA1Q1HG43 343 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 GPR33Q49SQ1 333 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 NANOGP8Q6NSW7 305 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 CTU1Q7Z7A3 348 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 MMAAQ8IVH4 418 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 FAM46DQ8NEK8 389 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 SLC9A6Q92581 669 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 MAELQ96JY0 434 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 TBX5Q99593 518 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 NANOGQ9H9S0 305 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 PLCH1Q4KWH8 1693 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 DISC1C4P0D8 188 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 IDSP22304 550 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 OPRL1P41146 370 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 PIK3CBP42338 1070 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 GDI2P50395 445 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 PRR5P85299 388 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms