RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 INTS5Q6P9B9 1019 aaKnown RBP13.49□□□□□ -0.25
CSPG4-201ENST00000308508 NEIL3Q8TAT5 605 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 POTEKPQ9BYX7 375 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 ADAMTS10Q9H324 1103 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 TPT1P8Q9HAU6 139 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 FZD10Q9ULW2 581 aa13.49□□□□□ -0.25
CSPG4-201ENST00000308508 SPATA31A6Q5VVP1 1343 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 TRIM64BA6NI03 449 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 COQ9O75208 318 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ST3GAL4Q11206 333 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ARSHQ5FYA8 562 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ZUFSPQ96AP4 578 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ARL6Q9H0F7 186 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 COPZ2Q9P299 210 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 A0A0G2JMP0 313 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 EIF1AYO14602 144 aaKnown RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 RBBP9O75884 186 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 CSNK2A2P19784 350 aaPredicted RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 EIF1AXP47813 144 aaKnown RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 OR4M2Q8NGB6 313 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 PEX13Q92968 403 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 BEX2Q9BXY8 128 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 BEX1Q9HBH7 125 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 FAM170BA6NMN3 283 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 GSTM2P28161 218 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 GSK3BP49841 420 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 HNRNPDQ14103 355 aaKnown RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 CHRFAM7AQ494W8 412 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 FKBP1CQ5VVH2 108 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 PLD4Q96BZ4 506 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF514Q96K75 400 aaPredicted RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ADAM7Q9H2U9 754 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 BIN3Q9NQY0 253 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 C4BPAP04003 597 aaKnown RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 FKBP1AP62942 108 aaKnown RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 BORAQ6PGQ7 559 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF767PQ75MW2 155 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 COPS5Q92905 334 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 SLC22A18Q96BI1 424 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 FBXL20Q96IG2 436 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 HSH2DQ96JZ2 352 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 POLE4Q9NR33 117 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 PAK1IP1Q9NWT1 392 aaPredicted RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 DIP2AQ14689 1571 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM150CB9EJG8 249 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 KLF11O14901 512 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 CD48P09326 243 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 NFE2L1Q14494 772 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 PSRC1Q6PGN9 363 aaPredicted RBP13.48□□□□□ -0.25
CSPG4-201ENST00000308508 EPGNQ6UW88 154 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 CHST9Q7L1S5 443 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 BEST3Q8N1M1 668 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ELP5Q8TE02 316 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ITM2CQ9NQX7 267 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 C19orf12Q9NSK7 152 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 DNAJC5BQ9UF47 199 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 A0A1B0GVI7 797 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 A0A1W2PPW3 197 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF792Q3KQV3 632 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 TMEM198Q66K66 360 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 CEACAM20Q6UY09 585 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 HYLS1Q96M11 299 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 SULT4A1Q9BR01 284 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 SYT4Q9H2B2 425 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 DEC1Q9P2X7 70 aa13.48□□□□□ -0.25
CSPG4-201ENST00000308508 DEPDC5O75140 1603 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 SH3PXD2BA1X283 911 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 FAM198BQ6UWH4 519 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 LAS2Q8IYD9 372 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ZSCAN4Q8NAM6 433 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 PSD4Q8NDX1 1056 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 NFKBIDQ8NI38 313 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 CERKQ8TCT0 537 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ZFP37Q9Y6Q3 630 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 H0YGN5 161 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 PAK4O96013 591 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 HCAR3P49019 387 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 CLCN2P51788 898 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 RFTN1Q14699 578 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 AUTS2Q8WXX7 1259 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 PLGP00747 810 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF182P17025 639 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 PRKACAP17612 351 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 DLSTP36957 453 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 GPRC6AQ5T6X5 926 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF550Q7Z398 422 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 FIBCD1Q8N539 461 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 TBC1D15Q8TC07 691 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 GRHPRQ9UBQ7 328 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 MGAT4BQ9UQ53 548 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 HCN4Q9Y3Q4 1203 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 CAPN5O15484 640 aaPredicted RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 EEF1E1O43324 174 aaKnown RBP13.47□□□□□ -0.25
CSPG4-201ENST00000308508 C7P10643 843 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 HSDL2Q6YN16 418 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 MALSU1Q96EH3 234 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 DGAT2Q96PD7 388 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 EFCAB11Q9BUY7 163 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 SLC32A1Q9H598 525 aa13.47□□□□□ -0.25
CSPG4-201ENST00000308508 NUFIP1Q9UHK0 495 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms