RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 IMPAD1Q9NX62 359 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 WASHC1A8K0Z3 465 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 H3BRB1 525 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 NUPL2O15504 423 aaKnown RBP13.02□□□□□ -0.33
SKA3-201ENST00000298260 KLK8O60259 260 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 ALPPP05187 535 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 ENGP17813 658 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 NUDT1P36639 197 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 GNPDA1P46926 289 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 ZNF33AQ06730 810 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 STK11Q15831 433 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 LIPKQ5VXJ0 399 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 TMEM65Q6PI78 240 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 GET4Q7L5D6 327 aaPredicted RBP13.02□□□□□ -0.33
SKA3-201ENST00000298260 TSEN54Q7Z6J9 526 aaKnown RBP13.02□□□□□ -0.33
SKA3-201ENST00000298260 CDH24Q86UP0 819 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 CLECL1Q8IZS7 167 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 TMEM132CQ8N3T6 1108 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 SYT14Q8NB59 555 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 OR6C4Q8NGE1 309 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 SPPL2AQ8TCT8 520 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 TTC9Q92623 222 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 MYLPFQ96A32 169 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 UPRTQ96BW1 309 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 MAGEB10Q96LZ2 347 aaPredicted RBP13.02□□□□□ -0.33
SKA3-201ENST00000298260 TRIM45Q9H8W5 580 aaPredicted RBP13.02□□□□□ -0.33
SKA3-201ENST00000298260 ZNF224Q9NZL3 707 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 FKBPLQ9UIM3 349 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 KLK4Q9Y5K2 254 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 PLOD3O60568 738 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 KCNK5O95279 499 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 C9P02748 559 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 HMBSP08397 361 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 ETV3P41162 512 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 P2RY14Q15391 338 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 ZRANB3Q5FWF4 1079 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 MANEALQ5VSG8 457 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 LSRQ86X29 649 aaPredicted RBP13.02□□□□□ -0.33
SKA3-201ENST00000298260 GALNT11Q8NCW6 608 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 MDGA1Q8NFP4 955 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 EGFL8Q99944 293 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 C1QTNF3Q9BXJ4 246 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 RHCGQ9UBD6 479 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 DERAQ9Y315 318 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 CMAHPQ9Y471 501 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 DOCK1Q14185 1865 aa13.02□□□□□ -0.33
SKA3-201ENST00000298260 CCDC88CQ9P219 2028 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 LOC285095A0A1B0GVY8 99 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 LOC730098B7Z3J9 87 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 ULK1O75385 1050 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 IGFBP1P08833 259 aaPredicted RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 ZNF30P17039 623 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 TNNI3P19429 210 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 CDH12P55289 794 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 ARHGAP1Q07960 439 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 ASAH1Q13510 395 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 TRIM71Q2Q1W2 868 aaKnown RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 NOTUMQ6P988 496 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 PLEKHM3Q6ZWE6 761 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 EIF3MQ7L2H7 374 aaKnown RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 KCTD20Q7Z5Y7 419 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 PLCZ1Q86YW0 608 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 ZBED6CLQ96FA7 236 aaPredicted RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 PPP3R2Q96LZ3 170 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 NMUR1Q9HB89 426 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 OSER1Q9NX31 292 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 GTPBP1O00178 669 aaKnown RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 PTGESO14684 152 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 VPS26AO75436 327 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 APOL3O95236 402 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 C1QBP02746 253 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 PKMP14618 531 aaKnown RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 SMSP52788 366 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 ATN1P54259 1190 aaPredicted RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 TAGLNQ01995 201 aaKnown RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 VMACQ2NL98 169 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 GLYR1Q49A26 553 aaPredicted RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 IQCCQ4KMZ1 466 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 MSANTD2Q6P1R3 559 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 FAM171BQ6P995 826 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 LIMS2Q7Z4I7 341 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 PTOV1Q86YD1 416 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 TCTE3Q8IZS6 198 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 SLC34A3Q8N130 599 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 SDR16C5Q8N3Y7 309 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 OR52E4Q8NGH9 312 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 OR9Q1Q8NGQ5 310 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 MYEOVQ96EZ4 313 aa13.01□□□□□ -0.33
SKA3-201ENST00000298260 EIF3KQ9UBQ5 218 aaKnown RBP13.01□□□□□ -0.33
SKA3-201ENST00000298260 A0A075B6Q4 140 aa13□□□□□ -0.33
SKA3-201ENST00000298260 CLIC1O00299 241 aa13□□□□□ -0.33
SKA3-201ENST00000298260 TAPBPO15533 448 aa13□□□□□ -0.33
SKA3-201ENST00000298260 FABP7O15540 132 aa13□□□□□ -0.33
SKA3-201ENST00000298260 RGS14O43566 566 aa13□□□□□ -0.33
SKA3-201ENST00000298260 TBX18O95935 607 aa13□□□□□ -0.33
SKA3-201ENST00000298260 SYPP08247 313 aa13□□□□□ -0.33
SKA3-201ENST00000298260 SSTR2P30874 369 aa13□□□□□ -0.33
SKA3-201ENST00000298260 RORCP51449 518 aa13□□□□□ -0.33
SKA3-201ENST00000298260 ABHD18Q0P651 414 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms