RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 C11orf16Q9NQ32 467 aa11.18□□□□□ -0.62
CLSTN3-201ENST00000266546 FCF1Q9Y324 198 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-201ENST00000266546 A8MU76 341 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CENPBD1B2RD01 187 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 GADD45GO95257 159 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 FGF4P08620 206 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ANXA4P09525 319 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ZNF24P17028 368 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 RPP38P78345 283 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 GCNT6Q5T4J0 391 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 HMBOX1Q6NT76 420 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 FAM92BQ6ZTR7 304 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 HS3ST5Q8IZT8 346 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ZNF675Q8TD23 568 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CLP1Q92989 425 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 IL4I1Q96RQ9 567 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CLDND1Q9NY35 253 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CLCA2Q9UQC9 943 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 IFT52Q9Y366 437 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 PCDHGA11Q9Y5H2 935 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 KCNE2Q9Y6J6 123 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 C2orf78A6NCI8 922 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 IQCF5A8MTL0 148 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 UPK1BO75841 260 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CSF2P04141 144 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ARSAP15289 507 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ARSDP51689 593 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 FOXA1P55317 472 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 NFKB2Q00653 900 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CHIT1Q13231 466 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CDK5R2Q13319 367 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ATXN7L2Q5T6C5 722 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CES4AQ5XG92 561 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 KANK2Q63ZY3 851 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 SERPINA9Q86WD7 417 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ZNF689Q96CS4 500 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 HSH2DQ96JZ2 352 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 TTYH2Q9BSA4 534 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 FNDC11Q9BVV2 318 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 SLC2A11Q9BYW1 496 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 TP63Q9H3D4 680 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 POLR3BQ9NW08 1133 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 DUS2Q9NX74 493 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 DEC1Q9P2X7 70 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 FBXO10Q9UK96 956 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 HSPB11Q9Y547 144 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 QSOX1O00391 747 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 KPNA5O15131 536 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 PRPS1L1P21108 318 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ARRB2P32121 409 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 DCTP40126 519 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 GDF5P43026 501 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 OR4D1Q15615 310 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CRTC2Q53ET0 693 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 TRMT11Q7Z4G4 463 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 SPRED1Q7Z699 444 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CPA6Q8N4T0 437 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 NSUN3Q9H649 340 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 POFUT2Q9Y2G5 429 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 FAM47E-STBD1D6RA91 191 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 MITFO75030 526 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 RHOP08100 348 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 ALDOCP09972 364 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CAP1Q01518 475 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 GSTM4Q03013 218 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 WSCD2Q2TBF2 565 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 UBE2UQ5VVX9 321 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 TMCO2Q7Z6W1 182 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CCDC28AQ8IWP9 274 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 CHDHQ8NE62 594 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 SUSD6Q92537 303 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 NARS2Q96I59 477 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 MROQ9BYG7 248 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 MCOLN1Q9GZU1 580 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 TNKS2Q9H2K2 1166 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 INTS6Q9UL03 887 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 RIMKLBQ9ULI2 386 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 MAP4K5Q9Y4K4 846 aa11.17□□□□□ -0.62
CLSTN3-201ENST00000266546 GLYATL1P3A0A0U1RQE8 302 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 ATF4P18848 351 aaPredicted RBP11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 PRKAG1P54619 331 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 ST3GAL4Q11206 333 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 ABRQ12979 859 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 RCAN2Q14206 197 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 PON2Q15165 354 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 SNAPC1Q16533 368 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 ATG9BQ674R7 924 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 IKBIPQ70UQ0 350 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 HTR3DQ70Z44 454 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 ELMOD2Q8IZ81 293 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 CMTM8Q8IZV2 173 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 OR8H3Q8N146 312 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 VANGL1Q8TAA9 524 aaPredicted RBP11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 C11orf24Q96F05 449 aaPredicted RBP11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 CDCA3Q99618 268 aaPredicted RBP11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 BEX2Q9BXY8 128 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 ZCCHC2Q9C0B9 1178 aaKnown RBP11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 SGK2Q9HBY8 427 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 A0A0D9SEW6 157 aa11.16□□□□□ -0.62
CLSTN3-201ENST00000266546 PPP6CO00743 305 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms