RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TRANK1O15050 2925 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 NUMA1Q14980 2115 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 A0A1B0GTW7 788 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 A0A1W2PP55 124 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 YY2O15391 372 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 AHCYL1O43865 530 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 KCNK5O95279 499 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 TGFB1P01137 390 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 ALPLP05186 524 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 FESP07332 822 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 LAMP2P13473 410 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 TEAD1P28347 426 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 GSTT1P30711 240 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 RPL3P39023 403 aaKnown RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 TNFRSF4P43489 277 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 TUBA4AP68366 448 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 ADARB1P78563 741 aaKnown RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 HYAL1Q12794 435 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 MYBPC3Q14896 1274 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 RAB30Q15771 203 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 VMACQ2NL98 169 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 ZNF776Q68DI1 518 aaPredicted RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 RBM44Q6ZP01 1051 aaKnown RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 ZNF551Q7Z340 670 aaPredicted RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 R3HCC1LQ7Z5L2 792 aaKnown RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 PATL1Q86TB9 770 aaKnown RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 ZZZ3Q8IYH5 903 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 PGBD3Q8N328 593 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 FGF14Q92915 247 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 RDH12Q96NR8 316 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 BHLHE41Q9C0J9 482 aaPredicted RBP12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 OR51B5Q9H339 312 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 REEP4Q9H6H4 257 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 TPT1P8Q9HAU6 139 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 ATAD3AQ9NVI7 634 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 RPS6KA6Q9UK32 745 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 VPS4AQ9UN37 437 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 BTBD3Q9Y2F9 522 aa12.44□□□□□ -0.42
SPTLC1-201ENST00000262554 NUP214P35658 2090 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 RFXAPO00287 272 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 RNASET2O00584 256 aaKnown RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 SEC24DO94855 1032 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 OR6B1O95007 311 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 ZNF682O95780 498 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 SLC35G4P0C7Q5 338 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 THRBP10828 461 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 ERGP11308 486 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 EFNA1P20827 205 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 PTX3P26022 381 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 SEC13P55735 322 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 IRF4Q15306 451 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 LRRC23Q53EV4 343 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 TMIGD1Q6UXZ0 262 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 ARMCX6Q7L4S7 300 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 GPR155Q7Z3F1 870 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 METTL4Q8N3J2 472 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 GANCQ8TET4 914 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 SPNS1Q9H2V7 528 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 TRIT1Q9H3H1 467 aaKnown RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 MBNL1Q9NR56 388 aaKnown RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 PHPT1Q9NRX4 125 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 TM7SF3Q9NS93 570 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 TUBA8Q9NY65 449 aaPredicted RBP12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 SERGEFQ9UGK8 458 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 UTS2RQ9UKP6 389 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 OR1A2Q9Y585 309 aa12.43□□□□□ -0.42
SPTLC1-201ENST00000262554 SAP18O00422 153 aaKnown RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 CLIC3O95833 236 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 GALK1P51570 392 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 RPS21P63220 83 aaKnown RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 EPS8Q12929 822 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 SGCGQ13326 291 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 BORAQ6PGQ7 559 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 USP51Q70EK9 711 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 C17orf64Q86WR6 236 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 ZDHHC21Q8IVQ6 265 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 C2orf73Q8N5S3 287 aaPredicted RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 OR4A15Q8NGL6 344 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 OR5K1Q8NHB7 308 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 PNPT1Q8TCS8 783 aaKnown RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 NCSTNQ92542 709 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 RBM4BQ9BQ04 359 aaKnown RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 RBM4Q9BWF3 364 aaKnown RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 PCBD2Q9H0N5 130 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 PELI2Q9HAT8 420 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 MYNNQ9NPC7 610 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 PAPOLBQ9NRJ5 636 aaKnown RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 SPATA7Q9P0W8 599 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 ZNF282Q9UDV7 671 aaPredicted RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 ACSL5Q9ULC5 683 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 ERVK-11Q9UQG0 969 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 DMTF1Q9Y222 760 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 GMEB1Q9Y692 573 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 CFAP20Q9Y6A4 193 aaKnown RBP12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 COMMD3-BMI1R4GMX3 469 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 DOCK9Q9BZ29 2069 aa12.42□□□□□ -0.42
SPTLC1-201ENST00000262554 TICRRQ7Z2Z1 1910 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms