RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TMEM178AQ8NBL3 297 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 MDS2Q8NDY4 140 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 OR51Q1Q8NH59 317 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 MCOLN3Q8TDD5 553 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 THAP3Q8WTV1 239 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 PEX13Q92968 403 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 CYTH2Q99418 400 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 GALPQ9UBC7 116 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 PPT2Q9UMR5 302 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF839A8K0R7 811 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 H7BY64 318 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 SGK494L7N484 410 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 MYO1CO00159 1063 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 MATN4O95460 622 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 TSPAN12O95859 305 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 SLC16A8O95907 504 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 F7P08709 466 aaPredicted RBP14.16□□□□□ -0.14
SYNE2-228ENST00000639659 ERGP11308 486 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 CSNK1G2P78368 415 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 CUL1Q13616 776 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 KCNJ11Q14654 390 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 MEI1Q5TIA1 1274 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 MRNIPQ6NTE8 343 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 PAPD4Q6PIY7 484 aaKnown RBP14.16□□□□□ -0.14
SYNE2-228ENST00000639659 RAD9BQ6WBX8 426 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 GHDCQ8N2G8 530 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 FRMD6Q96NE9 622 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 PRAP1Q96NZ9 151 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 IGSF5Q9NSI5 407 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 TREX1Q9NSU2 369 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 PAK5Q9P286 719 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF835Q9Y2P0 537 aa14.16□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF860A6NHJ4 632 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 BTNL10A8MVZ5 291 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 H3BMM5 538 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 PRRG2O14669 202 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 PFDN6O15212 129 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 ASNA1O43681 348 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 RDH16O75452 317 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 PSIP1O75475 530 aaKnown RBP14.15□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF24P17028 368 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 CAPN3P20807 821 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 MGAT1P26572 445 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 ATP5DP30049 168 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 TAS2R50P59544 299 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 FAM53BQ14153 422 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 ARHGAP19Q14CB8 494 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 OASLQ15646 514 aaKnown RBP14.15□□□□□ -0.14
SYNE2-228ENST00000639659 EXT1Q16394 746 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 KCTD19Q17RG1 926 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-228ENST00000639659 SFT2D3Q587I9 215 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 RNF187Q5TA31 235 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-228ENST00000639659 Q6ZPB1 254 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-228ENST00000639659 ARHGEF39Q8N4T4 335 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 SLC5A8Q8N695 610 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF480Q8WV37 535 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 LPGAT1Q92604 370 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 ALKBH8Q96BT7 664 aaKnown RBP14.15□□□□□ -0.14
SYNE2-228ENST00000639659 MFSD3Q96ES6 412 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 C14orf79Q96F83 325 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 BIRC8Q96P09 236 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 NPAS2Q99743 824 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 MCCC2Q9HCC0 563 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 SYBUQ9NX95 663 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 COQ3Q9NZJ6 369 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 BFARQ9NZS9 450 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 LRFN1Q9P244 771 aa14.15□□□□□ -0.14
SYNE2-228ENST00000639659 FAM90A27PA6NNH2 459 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 H0YIG0 161 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 FANCGO15287 622 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 NSA2O95478 260 aaKnown RBP14.14□□□□□ -0.15
SYNE2-228ENST00000639659 NADKO95544 446 aaPredicted RBP14.14□□□□□ -0.15
SYNE2-228ENST00000639659 ESR1P03372 595 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 SP1P08047 785 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 HSD17B2P37059 387 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 AGTR2P50052 363 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 ABATP80404 500 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 PTK6Q13882 451 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 GBX1Q14549 363 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 ABRAXAS2Q15018 415 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 TESK1Q15569 626 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 SLC25A25Q6KCM7 469 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 REXO1L1PQ8IX06 675 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 CPSF7Q8N684 471 aaKnown RBP14.14□□□□□ -0.15
SYNE2-228ENST00000639659 HORMAD2Q8N7B1 307 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 TSLPQ969D9 159 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 SCMH1Q96GD3 660 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 PEX11GQ96HA9 241 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 LPAR4Q99677 370 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 EBNA1BP2Q99848 306 aaKnown RBP14.14□□□□□ -0.15
SYNE2-228ENST00000639659 IL22Q9GZX6 179 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 CDCP1Q9H5V8 836 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 ANKHQ9HCJ1 492 aa14.14□□□□□ -0.15
SYNE2-228ENST00000639659 ASPDHA6ND91 283 aa14.13□□□□□ -0.15
SYNE2-228ENST00000639659 E7ENX8 843 aa14.13□□□□□ -0.15
SYNE2-228ENST00000639659 NDC80O14777 642 aa14.13□□□□□ -0.15
SYNE2-228ENST00000639659 CDC40O60508 579 aaKnown RBP eCLIP14.13□□□□□ -0.15
SYNE2-228ENST00000639659 SLC25A12O75746 678 aa14.13□□□□□ -0.15
SYNE2-228ENST00000639659 TPOP07202 933 aa14.13□□□□□ -0.15
SYNE2-228ENST00000639659 ARNTP27540 789 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms