RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MAGP20916 626 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 ACADVLP49748 655 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 HERC3Q15034 1050 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 CCDC6Q16204 474 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 PDCD4Q53EL6 469 aaKnown RBP19.27■□□□□ 0.68
CLN3-250ENST00000636839 PRR23BQ6ZRT6 265 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 RETREG3Q86VR2 466 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 EFCAB3Q8N7B9 438 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 KYQ8NBH2 561 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 WDR48Q8TAF3 677 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 C11orf24Q96F05 449 aaPredicted RBP19.27■□□□□ 0.68
CLN3-250ENST00000636839 ERVMER34-1Q9H9K5 563 aa19.27■□□□□ 0.68
CLN3-250ENST00000636839 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLN3-250ENST00000636839 CASC3O15234 703 aaKnown RBP19.27■□□□□ 0.67
CLN3-250ENST00000636839 GSC2O15499 205 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 LRATO95237 230 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 ITGAXP20702 1163 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 CMPK1P30085 196 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 NUDT2P50583 147 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 CYP4F3Q08477 520 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 SIM2Q14190 667 aaPredicted RBP19.27■□□□□ 0.67
CLN3-250ENST00000636839 KIR2DS3Q14952 304 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 ZNF425Q6IV72 752 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 BLOC1S3Q6QNY0 202 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 SYT12Q8IV01 421 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 CHTF18Q8WVB6 975 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 GFM2Q969S9 779 aaKnown RBP19.27■□□□□ 0.67
CLN3-250ENST00000636839 CLPTM1LQ96KA5 538 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 F2RL3Q96RI0 385 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 RHBGQ9H310 441 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 TMEM184CQ9NVA4 438 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 ZSCAN32Q9NX65 697 aa19.27■□□□□ 0.67
CLN3-250ENST00000636839 ANKDD1BA6NHY2 528 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 NPIPB8E9PQR5 432 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 SERPIND1P05546 499 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 NQO1P15559 274 aaKnown RBP19.26■□□□□ 0.67
CLN3-250ENST00000636839 PIK3CBP42338 1070 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 RASSF2P50749 326 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 DGKQP52824 942 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 ABATP80404 500 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 ZNF33BQ06732 778 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 GRIK2Q13002 908 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 OGFOD3Q6PK18 319 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 C11orf74Q86VG3 221 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 C17orf82Q86X59 251 aaPredicted RBP19.26■□□□□ 0.67
CLN3-250ENST00000636839 UBE2E3Q969T4 207 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 RTKNQ9BST9 563 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 AICDAQ9GZX7 198 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 SMOC1Q9H4F8 434 aa19.26■□□□□ 0.67
CLN3-250ENST00000636839 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.26■□□□□ 0.67
CLN3-250ENST00000636839 ASPDHA6ND91 283 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 RTCAO00442 366 aaKnown RBP19.25■□□□□ 0.67
CLN3-250ENST00000636839 HSD3B1P14060 373 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 CXCR2P25025 360 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 HSD3B2P26439 372 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 FASLGP48023 281 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 MRPL19P49406 292 aaKnown RBP19.25■□□□□ 0.67
CLN3-250ENST00000636839 ACSM2AQ08AH3 577 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 HLA-BQ31612 363 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 CACHD1Q5VU97 1274 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 ACSM2BQ68CK6 577 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 REP15Q6BDI9 236 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 DGLUCYQ7Z3D6 616 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 ZBTB44Q8NCP5 570 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 ZIM2Q9NZV7 527 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 KLHL18O94889 574 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 POLR2JP52435 117 aaKnown RBP19.25■□□□□ 0.67
CLN3-250ENST00000636839 SMU1Q2TAY7 513 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 FCRL6Q6DN72 434 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 FBXO42Q6P3S6 717 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 PAQR7Q86WK9 346 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 CREB3L4Q8TEY5 395 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 ASIC5Q9NY37 505 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 PACSIN3Q9UKS6 424 aa19.25■□□□□ 0.67
CLN3-250ENST00000636839 TRBC2A0A5B9 178 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 OR5K3A6NET4 321 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 HNRNPCL1O60812 293 aaKnown RBP19.24■□□□□ 0.67
CLN3-250ENST00000636839 CTSVO60911 334 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 MAD2L1Q13257 205 aaPredicted RBP19.24■□□□□ 0.67
CLN3-250ENST00000636839 TIGD2Q4W5G0 525 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SPESP1Q6UW49 350 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 COMMD6Q7Z4G1 85 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 BMP8AQ7Z5Y6 402 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 DSELQ8IZU8 1212 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 CDC26Q8NHZ8 85 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SLC22A18Q96BI1 424 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SPDL1Q96EA4 605 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 FCRL1Q96LA6 429 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SLC25A23Q9BV35 468 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 KLHL31Q9H511 634 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 C11orf16Q9NQ32 467 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 MAP10Q9P2G4 905 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 TSC22D4Q9Y3Q8 395 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 RNF215Q9Y6U7 377 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 ARID1BQ8NFD5 2236 aaPredicted RBP19.24■□□□□ 0.67
CLN3-250ENST00000636839 C2orf74A8MZ97 194 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 AKAP10O43572 662 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SORBS2O94875 1100 aaKnown RBP19.24■□□□□ 0.67
CLN3-250ENST00000636839 UBXN7O94888 489 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 HNRNPH1P31943 449 aaKnown RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms