RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SAC3D1A6NKF1 404 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 GSNP06396 782 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 HOXC4P09017 264 aaPredicted RBP21.22■□□□□ 0.99
PNKP-220ENST00000627232 ZCCHC18P0CG32 403 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 IL1RNP18510 177 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 IDSP22304 550 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 RPL3P39023 403 aaKnown RBP21.22■□□□□ 0.99
PNKP-220ENST00000627232 TXNL4AP83876 142 aaKnown RBP21.22■□□□□ 0.99
PNKP-220ENST00000627232 ZNF763Q0D2J5 394 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 CHST15Q7LFX5 561 aaPredicted RBP21.22■□□□□ 0.99
PNKP-220ENST00000627232 SERPINA11Q86U17 422 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 ST13P4Q8IZP2 240 aaPredicted RBP21.22■□□□□ 0.99
PNKP-220ENST00000627232 VPS37AQ8NEZ2 397 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 GPR156Q8NFN8 814 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 CDC26Q8NHZ8 85 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 MIEF2Q96C03 454 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 AURKBQ96GD4 344 aaPredicted RBP21.22■□□□□ 0.99
PNKP-220ENST00000627232 PHF12Q96QT6 1004 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 CENPKQ9BS16 269 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 TBCDQ9BTW9 1192 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 BDH2Q9BUT1 245 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 BTBD1Q9H0C5 482 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 NT5DC2Q9H857 520 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 OLAHQ9NV23 265 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 NCKAP1Q9Y2A7 1128 aa21.22■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3DA0A087WVF3 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3IA0A087WXS9 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3EA0A087X179 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3KA0A087X1G2 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 FAM149AA5PLN7 773 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3FA6NER0 549 aaPredicted RBP21.21■□□□□ 0.99
PNKP-220ENST00000627232 PRR23AA6NEV1 266 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 GABRR3A8MPY1 467 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3LB9A6J9 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 SOCS2O14508 198 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 EPN2O95208 641 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 RASAL1O95294 804 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 FUCA1P04066 466 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3HP0C7X1 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 LAMP1P11279 417 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 ACP5P13686 325 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 PTX3P26022 381 aaPredicted RBP21.21■□□□□ 0.99
PNKP-220ENST00000627232 SERPINB1P30740 379 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 GRSF1Q12849 480 aaKnown RBP eCLIP21.21■□□□□ 0.99
PNKP-220ENST00000627232 SF1Q15637 639 aaKnown RBP21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3GQ6DHY5 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3CQ6IPX1 549 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 COMMD6Q7Z4G1 85 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 EPHX4Q8IUS5 362 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 CHERPQ8IWX8 916 aaKnown RBP21.21■□□□□ 0.99
PNKP-220ENST00000627232 TBC1D3Q8IZP1 549 aaPredicted RBP21.21■□□□□ 0.99
PNKP-220ENST00000627232 PUM2Q8TB72 1066 aaKnown RBP eCLIP21.21■□□□□ 0.99
PNKP-220ENST00000627232 FAM162AQ96A26 154 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 SCARF2Q96GP6 870 aaPredicted RBP21.21■□□□□ 0.99
PNKP-220ENST00000627232 AIF1LQ9BQI0 150 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 SLC6A17Q9H1V8 727 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 RHBGQ9H310 441 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 UBAP1Q9NZ09 502 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 ZNF639Q9UID6 485 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 PIAS3Q9Y6X2 628 aa21.21■□□□□ 0.99
PNKP-220ENST00000627232 ARHGAP10A1A4S6 786 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 CACNB4O00305 520 aaPredicted RBP21.2■□□□□ 0.98
PNKP-220ENST00000627232 ACOX3O15254 700 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 CREG1O75629 220 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 B3GALT4O96024 378 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 GPX2P18283 190 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 HKDC1Q2TB90 917 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 PYCR3Q53H96 274 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 ARMCX6Q7L4S7 300 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 GPR155Q7Z3F1 870 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 R3HCC1LQ7Z5L2 792 aaKnown RBP21.2■□□□□ 0.98
PNKP-220ENST00000627232 CBR4Q8N4T8 237 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 ABHD11Q8NFV4 315 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 DNASE1L2Q92874 299 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 SIPA1Q96FS4 1042 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 CNBD2Q96M20 576 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 FERD3LQ96RJ6 166 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 INSM2Q96T92 566 aaPredicted RBP21.2■□□□□ 0.98
PNKP-220ENST00000627232 RAB11FIP5Q9BXF6 653 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 BHLHE41Q9C0J9 482 aaPredicted RBP21.2■□□□□ 0.98
PNKP-220ENST00000627232 REEP4Q9H6H4 257 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 MAGIXQ9H6Y5 334 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 MYNNQ9NPC7 610 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 DCAF13Q9NV06 445 aaKnown RBP21.2■□□□□ 0.98
PNKP-220ENST00000627232 LIMD1Q9UGP4 676 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 TAC3Q9UHF0 121 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 CFAP20Q9Y6A4 193 aaKnown RBP21.2■□□□□ 0.98
PNKP-220ENST00000627232 AK5Q9Y6K8 562 aa21.2■□□□□ 0.98
PNKP-220ENST00000627232 CLIC1O00299 241 aa21.19■□□□□ 0.98
PNKP-220ENST00000627232 CLOCKO15516 846 aa21.19■□□□□ 0.98
PNKP-220ENST00000627232 SH3BGRLO75368 114 aa21.19■□□□□ 0.98
PNKP-220ENST00000627232 DEAF1O75398 565 aaPredicted RBP21.19■□□□□ 0.98
PNKP-220ENST00000627232 PRSS23O95084 383 aa21.19■□□□□ 0.98
PNKP-220ENST00000627232 TGFB1P01137 390 aa21.19■□□□□ 0.98
PNKP-220ENST00000627232 PPIBP23284 216 aaKnown RBP21.19■□□□□ 0.98
PNKP-220ENST00000627232 RPL10P27635 214 aaKnown RBP21.19■□□□□ 0.98
PNKP-220ENST00000627232 MEF2AQ02078 507 aaPredicted RBP21.19■□□□□ 0.98
PNKP-220ENST00000627232 ERICH5Q6P6B1 374 aa21.19■□□□□ 0.98
PNKP-220ENST00000627232 VN1R5Q7Z5H4 357 aa21.19■□□□□ 0.98
PNKP-220ENST00000627232 SH3KBP1Q96B97 665 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms