RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MARCH7Q9H992 704 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 TBC1D13Q9NVG8 400 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 KLK11Q9UBX7 282 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 PGAP2Q9UHJ9 254 aa1.97□□□□□ -2.09
SCN1A-208ENST00000625916 WBP11Q9Y2W2 641 aaKnown RBP1.97□□□□□ -2.09
SCN1A-208ENST00000625916 TRIOBPQ9H2D6 2365 aa1.96□□□□□ -2.09
SCN1A-208ENST00000625916 GPR75-ASB3A0A0A6YYF3 556 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 GLTPD2A6NH11 291 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 B4E171 279 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 C2CD4DB7Z1M9 353 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 E7ENQ6 273 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 VENTXO95231 258 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 TRIM21P19474 475 aaKnown RBP1.96□□□□□ -2.1
SCN1A-208ENST00000625916 ALDH1B1P30837 517 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 TSPAN7P41732 249 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 RIPK4P57078 832 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 PRKG2Q13237 762 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 RAB41Q5JT25 222 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 ZNF506Q5JVG8 444 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 KRTAP5-7Q6L8G8 165 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 ZNF530Q6P9A1 599 aaPredicted RBP1.96□□□□□ -2.1
SCN1A-208ENST00000625916 ZNF595Q8IYB9 648 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 EXOC8Q8IYI6 725 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 RCOR2Q8IZ40 523 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 SLC22A15Q8IZD6 547 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 GUF1Q8N442 669 aaKnown RBP1.96□□□□□ -2.1
SCN1A-208ENST00000625916 OR9Q2Q8NGE9 314 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 PTPMT1Q8WUK0 201 aaPredicted RBP1.96□□□□□ -2.1
SCN1A-208ENST00000625916 KCNE4Q8WWG9 221 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 BTBD9Q96Q07 612 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 MAK16Q9BXY0 300 aaKnown RBP1.96□□□□□ -2.1
SCN1A-208ENST00000625916 UNC45AQ9H3U1 944 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 MYOZ2Q9NPC6 264 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 MYNNQ9NPC7 610 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 IL1RAPQ9NPH3 570 aa1.96□□□□□ -2.1
SCN1A-208ENST00000625916 MRPS18CQ9Y3D5 142 aaKnown RBP1.96□□□□□ -2.1
SCN1A-208ENST00000625916 NPHP3Q7Z494 1330 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 A0A087WZ39 114 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 CCL24O00175 119 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 BAG3O95817 575 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 CD4P01730 458 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 PROS1P07225 676 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 GIG44P09565 113 aaPredicted RBP1.95□□□□□ -2.1
SCN1A-208ENST00000625916 ITPK1Q13572 414 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 DUSP5Q16690 384 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 FAM106AQ4KMX7 169 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 ALFQ53S48 1182 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 HSP90AB4PQ58FF6 505 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 NHLRC3Q5JS37 347 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 OR4C11Q6IEV9 310 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 RPAINQ86UA6 219 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 KBTBD6Q86V97 674 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 CARM1Q86X55 608 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 LRRC49Q8IUZ0 686 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 GBP7Q8N8V2 638 aaPredicted RBP1.95□□□□□ -2.1
SCN1A-208ENST00000625916 SLC22A18Q96BI1 424 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 NXNL1Q96CM4 212 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 KLHL5Q96PQ7 755 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 MYH16Q9H6N6 1097 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 SLC35C2Q9NQQ7 365 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 SUCLA2Q9P2R7 463 aaPredicted RBP1.95□□□□□ -2.1
SCN1A-208ENST00000625916 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
SCN1A-208ENST00000625916 LOC100509620A0A075B734 347 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 hCG_38984A0A1B0GV85 526 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 WI2-2373I1.2A0A1W2PRP0 233 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 PI4KAP2A4QPH2 592 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 K7EQG2 157 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 RTCAO00442 366 aaKnown RBP1.94□□□□□ -2.1
SCN1A-208ENST00000625916 AP3D1O14617 1153 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 SNX3O60493 162 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 C4BPBP20851 252 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 PSMB10P40306 273 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 ABCE1P61221 599 aaKnown RBP1.94□□□□□ -2.1
SCN1A-208ENST00000625916 CUL3Q13618 768 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 CYLC2Q14093 348 aaPredicted RBP1.94□□□□□ -2.1
SCN1A-208ENST00000625916 MLF2Q15773 248 aaPredicted RBP1.94□□□□□ -2.1
SCN1A-208ENST00000625916 SLC22A6Q4U2R8 563 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 JAKMIP3Q5VZ66 844 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 PRR27Q6MZM9 219 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 CYB5D1Q6P9G0 228 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 PAMR1Q6UXH9 720 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 LRTM2Q8N967 370 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 FLVCR1-AS1Q8TAF5 88 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 C11orf52Q96A22 123 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 MOB3AQ96BX8 217 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 ZNF799Q96GE5 643 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 CFAP57Q96MR6 1250 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 CPSF3Q9UKF6 684 aaKnown RBP1.94□□□□□ -2.1
SCN1A-208ENST00000625916 PILRAQ9UKJ1 303 aa1.94□□□□□ -2.1
SCN1A-208ENST00000625916 PTRH2Q9Y3E5 179 aaKnown RBP1.94□□□□□ -2.1
SCN1A-208ENST00000625916 ARID4BQ4LE39 1312 aaPredicted RBP1.93□□□□□ -2.1
SCN1A-208ENST00000625916 RNF123Q5XPI4 1314 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 A0A087X0M5 115 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 LOC102723996A0A087X1L8 192 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 KLF18A0A0U1RQI7 1052 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 A0A1B0GX30 115 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 A0A1W2PPQ1 181 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 MTMR11A4FU01 709 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 CASTOR2A6NHX0 329 aa1.93□□□□□ -2.1
SCN1A-208ENST00000625916 RNF103O00237 685 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms