RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TRPV5Q9NQA5 729 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 GRHL1Q9NZI5 618 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 FAM227AF5H4B4 570 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 EIF1AYO14602 144 aaKnown RBP11.04□□□□□ -0.64
CLIP1-219ENST00000620786 TACSTD2P09758 323 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 RAP2AP10114 183 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 PDHA2P29803 388 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 ALDH3A2P51648 485 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 STC1P52823 247 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 GBX2P52951 348 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-219ENST00000620786 OGDHQ02218 1023 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 RTP2Q5QGT7 225 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 FIP1L1Q6UN15 594 aaKnown RBP11.04□□□□□ -0.64
CLIP1-219ENST00000620786 TMPRSS9Q7Z410 1059 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 FAM156AQ8NDB6 213 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 C17orf62Q9BQA9 187 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 FKBP7Q9Y680 259 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 CAPN8A6NHC0 703 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF879B4DU55 563 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 TNFRSF10BO14763 440 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 OPN1SWP03999 348 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 DCTN2Q13561 401 aaKnown RBP11.04□□□□□ -0.64
CLIP1-219ENST00000620786 C17orf99Q6UX52 265 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 DPY19L3Q6ZPD9 716 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 OR10G2Q8NGC3 310 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 OR5K1Q8NHB7 308 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 FOXJ1Q92949 421 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 OMA1Q96E52 524 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 LRIG1Q96JA1 1093 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 SLC39A3Q9BRY0 314 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 AKTIPQ9H8T0 292 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 GALPQ9UBC7 116 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 PCDHGA2Q9Y5H1 932 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF840PA6NDX5 716 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF860A6NHJ4 632 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 OR5K4A6NMS3 321 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 AHSGP02765 367 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 SOX4Q06945 474 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-219ENST00000620786 CST6Q15828 149 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 OR10T2Q8NGX3 314 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 C1orf216Q8TAB5 229 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 DIRAS2Q96HU8 199 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 CD244Q9BZW8 370 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 MBD2Q9UBB5 411 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 WASF2Q9Y6W5 498 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 MAU2Q9Y6X3 613 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 A0A0X1KG70 313 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 TP53I11O14683 189 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 MXD1Q05195 221 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 TSC22D1Q15714 1073 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 ZC3H14Q6PJT7 736 aaKnown RBP11.04□□□□□ -0.64
CLIP1-219ENST00000620786 CEACAM20Q6UY09 585 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 ASPGQ86U10 573 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 CILP2Q8IUL8 1156 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF676Q8N7Q3 588 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 BACE2Q9Y5Z0 518 aa11.04□□□□□ -0.64
CLIP1-219ENST00000620786 H7BY64 318 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 AHSA1O95433 338 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 LDLRAD1Q5T700 205 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF627Q7L945 461 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 GEMIN6Q8WXD5 167 aaKnown RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 SORCS1Q8WY21 1168 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 SH3YL1Q96HL8 342 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 PRAP1Q96NZ9 151 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 CDCA3Q99618 268 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 WDR77Q9BQA1 342 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 CHCHD6Q9BRQ6 235 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 FETUBQ9UGM5 382 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 SPEF2Q9C093 1822 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 GLOD5A6NK44 160 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 CXorf49A8MYA2 514 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 CLRN1P58418 232 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 AP3S2P59780 193 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 GPR153Q6NV75 609 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 C1orf94Q6P1W5 598 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 PAAF1Q9BRP4 392 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 LRRC3Q9BY71 257 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 B3GNT4Q9C0J1 378 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 DNAJB9Q9UBS3 223 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 RIMKLBQ9ULI2 386 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 SDC3O75056 442 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 MTHFD1P11586 935 aaKnown RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 EDNRAP25101 427 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 GSTT1P30711 240 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 MORN1Q5T089 497 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 TMEM214Q6NUQ4 689 aaKnown RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 NRROSQ86YC3 692 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 PDPRQ8NCN5 879 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 GLYATL1Q969I3 302 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 PTCHD1Q96NR3 888 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 CMKLR1Q99788 373 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 TRBC2A0A5B9 178 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 PGRP06401 933 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 JUPP14923 745 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 PGAM2P15259 253 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF33AQ06730 810 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 CRELD2Q6UXH1 353 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 ZC3HC1Q86WB0 502 aaKnown RBP11.03□□□□□ -0.64
CLIP1-219ENST00000620786 KLHL36Q8N4N3 616 aa11.03□□□□□ -0.64
CLIP1-219ENST00000620786 NAXEQ8NCW5 288 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms