RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LYPLAL1Q5VWZ2 237 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 NKAIN2Q5VXU1 208 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 RAP1GAP2Q684P5 730 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 PLEKHA7Q6IQ23 1121 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 MRNIPQ6NTE8 343 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 MTFR2Q6P444 385 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 C11orf88Q6PI97 169 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 FAM47EQ6ZV65 393 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 RAPH1Q70E73 1250 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 H1FNTQ75WM6 255 aaPredicted RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 CCDC91Q7Z6B0 441 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 CUZD1Q86UP6 607 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 GKN2Q86XP6 184 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 EPHX4Q8IUS5 362 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 CCDC28AQ8IWP9 274 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 MPP5Q8N3R9 675 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 CPXM2Q8N436 756 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 FSTL5Q8N475 847 aaPredicted RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 TTC39CQ8N584 583 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 BMPERQ8N8U9 685 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 KCTD6Q8NC69 237 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 SPSB4Q96A44 273 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 C3orf49Q96BT1 292 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF845Q96IR2 970 aaPredicted RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 LENG8Q96PV6 779 aaPredicted RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF559Q9BR84 538 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 GPATCH1Q9BRR8 931 aaKnown RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ZPBPQ9BS86 351 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 FUZQ9BT04 418 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 MSTO1Q9BUK6 570 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 TSPY26PQ9H489 355 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ACTL8Q9H568 366 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ASB7Q9H672 318 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 PDE7BQ9NP56 450 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 PDRG1Q9NUG6 133 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 SLCO3A1Q9UIG8 710 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 CPSF3Q9UKF6 684 aaKnown RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 SARDHQ9UL12 918 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 DAPP1Q9UN19 280 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ERVW-1Q9UQF0 538 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 BTRCQ9Y297 605 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 DNAJC16Q9Y2G8 782 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 LYVE1Q9Y5Y7 322 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 NYNRINQ9P2P1 1898 aaKnown RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 WNK1Q9H4A3 2382 aa4.21□□□□□ -1.73
LINC00540-201ENST00000611481 KLF18A0A0U1RQI7 1052 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 FAM92AA1XBS5 289 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 SAC3D1A6NKF1 404 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TTC36A6NLP5 189 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 PP2D1A8MPX8 630 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 MYO1CO00159 1063 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 UBE2CO00762 179 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 FPGTO14772 594 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 SMAD6O43541 496 aaKnown RBP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 JRKO75564 520 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 ZWINTO95229 277 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 THRAP10827 490 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 CTSEP14091 401 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 CD1CP29017 333 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 PSMB10P40306 273 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 SMSP52788 366 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 RPS18P62269 152 aaKnown RBP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 RPP30P78346 268 aaKnown RBP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TFAMQ00059 246 aaKnown RBP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 PPARDQ03181 441 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 KYNUQ16719 465 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 KRTAP24-1Q3LI83 254 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 PIP5KL1Q5T9C9 394 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TTC22Q5TAA0 569 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 ISM2Q6H9L7 571 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 NEK5Q6P3R8 708 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 SZRD1Q7Z422 152 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 ACOT1Q86TX2 421 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 UNC45BQ8IWX7 931 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 DAW1Q8N136 415 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 CIARTQ8N365 385 aaPredicted RBP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 SLC15A4Q8N697 577 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 ACBD4Q8NC06 268 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 FAR1Q8WVX9 515 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 CPT1BQ92523 772 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 JAKMIP2Q96AA8 810 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TMA16Q96EY4 203 aaKnown RBP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 STAMBPL1Q96FJ0 436 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 THOC3Q96J01 351 aaKnown RBP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TCEANC2Q96MN5 208 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 MOGAT1Q96PD6 335 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 SIGLEC11Q96RL6 698 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 RUFY1Q96T51 708 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 ULBP3Q9BZM4 244 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 BRD8Q9H0E9 1235 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 DPEP3Q9H4B8 488 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 NMUR1Q9HB89 426 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 ZBTB26Q9HCK0 441 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TUFT1Q9NNX1 390 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.21□□□□□ -1.74
LINC00540-201ENST00000611481 GDAP2Q9NXN4 497 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TAS2R10Q9NYW0 307 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 IL37Q9NZH6 218 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 NDUFAF4Q9P032 175 aa4.21□□□□□ -1.74
LINC00540-201ENST00000611481 TMEM9Q9P0T7 183 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms