RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TM4SF19Q96DZ7 209 aa14.49□□□□□ -0.09
LIG1-219ENST00000600055 THAP11Q96EK4 314 aa14.49□□□□□ -0.09
LIG1-219ENST00000600055 MOCOSQ96EN8 888 aa14.49□□□□□ -0.09
LIG1-219ENST00000600055 UBL7Q96S82 380 aaPredicted RBP14.49□□□□□ -0.09
LIG1-219ENST00000600055 PELI2Q9HAT8 420 aa14.49□□□□□ -0.09
LIG1-219ENST00000600055 DNAJC11Q9NVH1 559 aa14.49□□□□□ -0.09
LIG1-219ENST00000600055 TRBC2A0A5B9 178 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 ERVH48-1M5A8F1 160 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 MAP2K7O14733 419 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 FOXS1O43638 330 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 PRAMEF4O60810 478 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 RFPL1O75677 317 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 IPO13O94829 963 aaKnown RBP14.48□□□□□ -0.09
LIG1-219ENST00000600055 ONECUT2O95948 504 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 EMP3P54852 163 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 REEP5Q00765 189 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 CDC16Q13042 620 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 UGT8Q16880 541 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 ERCC6LQ2NKX8 1250 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 CRTC2Q53ET0 693 aaPredicted RBP14.48□□□□□ -0.09
LIG1-219ENST00000600055 TECRLQ5HYJ1 363 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 PRAMEF9Q5VWM5 478 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 MRPL14Q6P1L8 145 aaKnown RBP14.48□□□□□ -0.09
LIG1-219ENST00000600055 SLCO4C1Q6ZQN7 724 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 ASPGQ86U10 573 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 KCT2Q8NC54 265 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 RHEBL1Q8TAI7 183 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 SLC13A3Q8WWT9 602 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.48□□□□□ -0.09
LIG1-219ENST00000600055 COL26A1Q96A83 441 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 SARGQ9BW04 601 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 CD244Q9BZW8 370 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 CNOT10Q9H9A5 744 aaKnown RBP14.48□□□□□ -0.09
LIG1-219ENST00000600055 ZNF304Q9HCX3 659 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 CTSFQ9UBX1 484 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 TBK1Q9UHD2 729 aa14.48□□□□□ -0.09
LIG1-219ENST00000600055 PTRH2Q9Y3E5 179 aaKnown RBP14.48□□□□□ -0.09
LIG1-219ENST00000600055 HEATR5BQ9P2D3 2071 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 A0A0A6YYC8 382 aaPredicted RBP14.47□□□□□ -0.09
LIG1-219ENST00000600055 LRRC14BA6NHZ5 514 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 SYCE1LA8MT33 242 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 FOXO6A8MYZ6 492 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 I3L1I5 382 aaPredicted RBP14.47□□□□□ -0.09
LIG1-219ENST00000600055 TXNDC9O14530 226 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 FFAR3O14843 346 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 GPR42O15529 346 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 RECKO95980 971 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 ITGB2P05107 769 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 C1GALT1C1LP0DN25 315 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 GNAZP19086 355 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 EPORP19235 508 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 SCTRP47872 440 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 LY6DQ14210 128 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 RBBP5Q15291 538 aaKnown RBP14.47□□□□□ -0.09
LIG1-219ENST00000600055 SOWAHCQ53LP3 525 aaPredicted RBP14.47□□□□□ -0.09
LIG1-219ENST00000600055 LGSNQ5TDP6 509 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 GARNL3Q5VVW2 1013 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 KLC3Q6P597 504 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 TIFABQ6ZNK6 161 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 SHISA6Q6ZSJ9 500 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 OVCH1Q7RTY7 1134 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 PRSS41Q7RTY9 318 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 SHISA5Q8N114 240 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 EXD3Q8N9H8 876 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 ANKRD53Q8N9V6 530 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 CAMKVQ8NCB2 501 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 ZCCHC10Q8TBK6 192 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 ADAMTS17Q8TE56 1095 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 MMABQ96EY8 250 aaPredicted RBP14.47□□□□□ -0.09
LIG1-219ENST00000600055 SCYL1Q96KG9 808 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 C17orf62Q9BQA9 187 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 AIF1LQ9BQI0 150 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 CPSF2Q9P2I0 782 aaKnown RBP14.47□□□□□ -0.09
LIG1-219ENST00000600055 PSMC3IPQ9P2W1 217 aaPredicted RBP14.47□□□□□ -0.09
LIG1-219ENST00000600055 FETUBQ9UGM5 382 aa14.47□□□□□ -0.09
LIG1-219ENST00000600055 FER1L5A0AVI2 2057 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 IQANK1A0A1B0GTG1 560 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 SMIM23A6NLE4 172 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 CLGNO14967 610 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 ATXN7O15265 892 aaPredicted RBP14.46□□□□□ -0.09
LIG1-219ENST00000600055 SERPIND1P05546 499 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 UMODP07911 640 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 FAM87AP0C7U9 286 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 PIM1P11309 404 aaPredicted RBP14.46□□□□□ -0.09
LIG1-219ENST00000600055 GFAPP14136 432 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 FBLP22087 321 aaKnown RBP14.46□□□□□ -0.09
LIG1-219ENST00000600055 HSD17B3P37058 310 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 SLCO1A2P46721 670 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 SLBPQ14493 270 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIG1-219ENST00000600055 NAA30Q147X3 362 aaPredicted RBP14.46□□□□□ -0.09
LIG1-219ENST00000600055 NKG7Q16617 165 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 PDK4Q16654 411 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 PFKFB4Q16877 469 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 SYT16Q17RD7 645 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 ATG9BQ674R7 924 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 TMEM214Q6NUQ4 689 aaKnown RBP14.46□□□□□ -0.09
LIG1-219ENST00000600055 WDR93Q6P2C0 686 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 PRMT9Q6P2P2 845 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 BORAQ6PGQ7 559 aa14.46□□□□□ -0.09
LIG1-219ENST00000600055 OR9A4Q8NGU2 314 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms