RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ERGP11308 486 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 XCR1P46094 333 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 CYB561P49447 251 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 HADHBP55084 474 aaKnown RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 TRIM14Q14142 442 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 PTRHD1Q6GMV3 140 aaKnown RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 ZNF425Q6IV72 752 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 ARHGAP11AQ6P4F7 1023 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 ACAD11Q709F0 780 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 OTOAQ7RTW8 1153 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 PCGF5Q86SE9 256 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 OR9A4Q8NGU2 314 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 OR6P1Q8NGX9 317 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 OR51Q1Q8NH59 317 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 KRT35Q92764 455 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 TMEM125Q96AQ2 219 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 SEC16BQ96JE7 1060 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 LPAR4Q99677 370 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 FAM118BQ9BPY3 351 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 POLDIP3Q9BY77 421 aaKnown RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 NHEJ1Q9H9Q4 299 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 PCYOX1Q9UHG3 505 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 RIMKLBQ9ULI2 386 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 RUVBL2Q9Y230 463 aaKnown RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 KLF13Q9Y2Y9 288 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 CDC40O60508 579 aaKnown RBP eCLIP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 METTL18O95568 372 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 TPM3P06753 285 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 TFEBP19484 476 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 PTPN7P35236 360 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 TTPAP49638 278 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 MEOX1P50221 254 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 PRAMEP78395 509 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ACVR1Q04771 509 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 PRDX1Q06830 199 aaKnown RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ACTN3Q08043 901 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 CDH17Q12864 832 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 SEMA3AQ14563 771 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 USP10Q14694 798 aaKnown RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ARHGAP19Q14CB8 494 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ABRAXAS2Q15018 415 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ANKRD20A4Q4UJ75 823 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 SFT2D3Q587I9 215 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 TSTD2Q5T7W7 516 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ZNF468Q5VIY5 522 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ICE2Q659A1 982 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 C11orf63Q6NUN7 778 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 CSPG4Q6UVK1 2322 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 SUSD1Q6UWL2 747 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ZNF534Q76KX8 674 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ADCK2Q7Z695 626 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 RPS19BP1Q86WX3 136 aaKnown RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 CCDC71Q8IV32 467 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 OR9A1PQ8NGU1 263 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 SCN2AQ99250 2005 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 EBNA1BP2Q99848 306 aaKnown RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 OSBPL8Q9BZF1 889 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 CLEC4MQ9H2X3 399 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 CDCP1Q9H5V8 836 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 TRIM45Q9H8W5 580 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ZNF358Q9NW07 568 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 IFNKQ9P0W0 207 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 HCN3Q9P1Z3 774 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 SLC2A6Q9UGQ3 507 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 TAC3Q9UHF0 121 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 ANAPC5Q9UJX4 755 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 L3MBTL1Q9Y468 752 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 HRH3Q9Y5N1 445 aa9.52□□□□□ -0.89
TRIM28-210ENST00000597618 HCFC1P51610 2035 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 HRNRQ86YZ3 2850 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-210ENST00000597618 COL6A5A8TX70 2615 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 ZNF839A8K0R7 811 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 KLRC4-KLRK1H3BQV0 150 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 MYO1CO00159 1063 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 HAT1O14929 419 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 PROM1O43490 865 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 HS6ST1O60243 411 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 TJP3O95049 919 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 TPP2P29144 1249 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-210ENST00000597618 ATP5DP30049 168 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 TRHRP34981 398 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-210ENST00000597618 CTNNA1P35221 906 aaKnown RBP9.51□□□□□ -0.89
TRIM28-210ENST00000597618 HSD17B2P37059 387 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 HLCSP50747 726 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 DGKQP52824 942 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 ITGA8P53708 1063 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 SLC26A5P58743 744 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 ADAM8P78325 824 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 ABATP80404 500 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 PMPCAQ10713 525 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 TSTA3Q13630 321 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-210ENST00000597618 NSDHLQ15738 373 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 CMPK2Q5EBM0 449 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.51□□□□□ -0.89
TRIM28-210ENST00000597618 CAMKMTQ7Z624 323 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 LUZP1Q86V48 1076 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 ZNF227Q86WZ6 799 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 LRRC6Q86X45 466 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 RPRMLQ8N4K4 120 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 FAM71DQ8N9W8 422 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms