RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PNPLA2Q96AD5 504 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 TSPAN17Q96FV3 270 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 CPNE1Q99829 537 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 MCMBPQ9BTE3 642 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 PHACTR1Q9C0D0 580 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 TGIF2Q9GZN2 237 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 POPDC3Q9HBV1 291 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 SMYD2Q9NRG4 433 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 IKZF3Q9UKT9 509 aa14.5□□□□□ -0.09
TRIM28-203ENST00000593582 CCDC88CQ9P219 2028 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 TNRC6AQ8NDV7 1962 aaKnown RBP14.49□□□□□ -0.09
TRIM28-203ENST00000593582 COL12A1Q99715 3063 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 NPEPPSL1A6NEC2 478 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 CXorf49A8MYA2 514 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-203ENST00000593582 H0YIG0 161 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 CDC7O00311 574 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 FFAR3O14843 346 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 PCDH17O14917 1159 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 GPR42O15529 346 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 ALOX12BO75342 701 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 SORBS2O94875 1100 aaKnown RBP14.49□□□□□ -0.09
TRIM28-203ENST00000593582 NSA2O95478 260 aaKnown RBP14.49□□□□□ -0.09
TRIM28-203ENST00000593582 HEXBP07686 556 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 GSTA2P09210 222 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 SLC35G6P0C7Q6 338 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 CXCR2P25025 360 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 HNMTP50135 292 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 EMP2P54851 167 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 CSHL1Q14406 222 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 AGAP7PQ5VUJ5 663 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 ATG9BQ674R7 924 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 SLC6A19Q695T7 634 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 TMEM214Q6NUQ4 689 aaKnown RBP14.49□□□□□ -0.09
TRIM28-203ENST00000593582 IGFL3Q6UXB1 125 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 FRA10AC1Q70Z53 315 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 ADAMTSL2Q86TH1 951 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 CEP97Q8IW35 865 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 MFSD9Q8NBP5 474 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 OR9A4Q8NGU2 314 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 FBXO25Q8TCJ0 367 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 SLC13A3Q8WWT9 602 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 TM4SF19Q96DZ7 209 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 C16orf45Q96MC5 204 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-203ENST00000593582 AGAP4Q96P64 663 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 OR4K3Q96R72 315 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 EGFL8Q99944 293 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 MACROD1Q9BQ69 325 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 LHPPQ9H008 270 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 CTNNAL1Q9UBT7 734 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 MTO1Q9Y2Z2 717 aaKnown RBP14.49□□□□□ -0.09
TRIM28-203ENST00000593582 HEATR5BQ9P2D3 2071 aa14.49□□□□□ -0.09
TRIM28-203ENST00000593582 ANKRD12Q6UB98 2062 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 OR1F1O43749 312 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 LCMT2O60294 686 aaKnown RBP14.48□□□□□ -0.09
TRIM28-203ENST00000593582 VPS4BO75351 444 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 HPP00738 406 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 GP5P40197 560 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 CD97P48960 835 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 MAT1AQ00266 395 aaKnown RBP14.48□□□□□ -0.09
TRIM28-203ENST00000593582 CDKL1Q00532 357 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 USP10Q14694 798 aaKnown RBP14.48□□□□□ -0.09
TRIM28-203ENST00000593582 SYT16Q17RD7 645 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 NDUFAF7Q7L592 441 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 CTAGE3PQ8IX95 158 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 PARP9Q8IXQ6 854 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 ZADH2Q8N4Q0 377 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 OR4K1Q8NGD4 311 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 ANKRD49Q8WVL7 239 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 SLC5A11Q8WWX8 675 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 C8orf44Q96CB5 159 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 RBBP8Q99708 897 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 SARGQ9BW04 601 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 ANKHQ9HCJ1 492 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 LUZP4Q9P127 313 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 MKL2Q9ULH7 1088 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 VPS4AQ9UN37 437 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 B3GNT3Q9Y2A9 372 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 MRPS2Q9Y399 296 aaKnown RBP14.48□□□□□ -0.09
TRIM28-203ENST00000593582 DYRK1BQ9Y463 629 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 OARD1Q9Y530 152 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 KCNE2Q9Y6J6 123 aa14.48□□□□□ -0.09
TRIM28-203ENST00000593582 PRRC2CQ9Y520 2896 aaKnown RBP14.48□□□□□ -0.09
TRIM28-203ENST00000593582 FLNBO75369 2602 aaKnown RBP14.48□□□□□ -0.09
TRIM28-203ENST00000593582 NSG1A0A0A6YYJ2 146 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 TRBC2A0A5B9 178 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 FAM159BA6NKW6 160 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 NDUFS4O43181 175 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 BMP10O95393 424 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 STMN1P16949 149 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 IL1RNP18510 177 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 VARSP26640 1264 aaKnown RBP14.47□□□□□ -0.09
TRIM28-203ENST00000593582 STX2P32856 288 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 MAGEA4P43358 317 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 GPX6P59796 221 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 MEF2AQ02078 507 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-203ENST00000593582 PWP1Q13610 501 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 TRADDQ15628 312 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 TSNQ15631 228 aaKnown RBP14.47□□□□□ -0.09
TRIM28-203ENST00000593582 C8orf74Q6P047 294 aa14.47□□□□□ -0.09
TRIM28-203ENST00000593582 ZDHHC24Q6UX98 284 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms