RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NAE1Q13564 534 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 ZXDCQ2QGD7 858 aaPredicted RBP19.41■□□□□ 0.7
SHMT1-209ENST00000582653 LRRC8EQ6NSJ5 796 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 VN1R4Q7Z5H5 301 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 PDIK1LQ8N165 341 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 OR9A4Q8NGU2 314 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 GABPB2Q8TAK5 448 aaPredicted RBP19.41■□□□□ 0.7
SHMT1-209ENST00000582653 CNDP1Q96KN2 507 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 C14orf105Q9NVL8 296 aa19.41■□□□□ 0.7
SHMT1-209ENST00000582653 MDC1Q14676 2089 aaKnown RBP19.4■□□□□ 0.7
SHMT1-209ENST00000582653 HIVEP3Q5T1R4 2406 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 SLC16A5O15375 505 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 LCMT2O60294 686 aaKnown RBP19.4■□□□□ 0.7
SHMT1-209ENST00000582653 TSPAN12O95859 305 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 SERPINA7P05543 415 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 PRR35P0CG20 571 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 CSNK1G2P78368 415 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 MORF4L2Q15014 288 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 HECTD2Q5U5R9 776 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 HIBCHQ6NVY1 386 aaPredicted RBP19.4■□□□□ 0.7
SHMT1-209ENST00000582653 KIAA0408Q6ZU52 694 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 PRSS41Q7RTY9 318 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 GPATCH11Q8N954 259 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 HAS2Q92819 552 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 TEX264Q9Y6I9 313 aa19.4■□□□□ 0.7
SHMT1-209ENST00000582653 KCNE1BA0A087WTH5 132 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 LOC102723996A0A087X1L8 192 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 IGHV1-45A0A0A0MS14 117 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 TTI1O43156 1089 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 JRKO75564 520 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 BMP10O95393 424 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 CELA2AP08217 269 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 ICAM2P13598 275 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 HRH2P25021 359 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 COL8A1P27658 744 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 ITGA8P53708 1063 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 RPS15AP62244 130 aaKnown RBP19.39■□□□□ 0.69
SHMT1-209ENST00000582653 SP140Q13342 867 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 PDAP1Q13442 181 aaKnown RBP19.39■□□□□ 0.69
SHMT1-209ENST00000582653 NDUFA9Q16795 377 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 TMEM205Q6UW68 189 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 RIPOR1Q6ZS17 1223 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 SYDE1Q6ZW31 735 aaPredicted RBP19.39■□□□□ 0.69
SHMT1-209ENST00000582653 LURAP1LQ8IV03 231 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 ANKMY2Q8IV38 441 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 ZC3H7AQ8IWR0 971 aaKnown RBP19.39■□□□□ 0.69
SHMT1-209ENST00000582653 OR1N1Q8NGS0 311 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 PYCR2Q96C36 320 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 OLFM1Q99784 485 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 SGPP1Q9BX95 441 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 TRIM31Q9BZY9 425 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 PCBD2Q9H0N5 130 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 MKL2Q9ULH7 1088 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 VWA7Q9Y334 891 aa19.39■□□□□ 0.69
SHMT1-209ENST00000582653 HIST1H2AGP0C0S8 130 aaPredicted RBP19.38■□□□□ 0.69
SHMT1-209ENST00000582653 CDH1P12830 882 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 NPPBP16860 134 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 HIST1H2ADP20671 130 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 SOX11P35716 441 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 BCL6P41182 706 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 AVPR1BP47901 424 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 IL2P60568 153 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 GALNT7Q86SF2 657 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 C17orf64Q86WR6 236 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 BRIX1Q8TDN6 353 aaKnown RBP19.38■□□□□ 0.69
SHMT1-209ENST00000582653 HIST1H2AHQ96KK5 128 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 HIST1H2AJQ99878 128 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 H2AFJQ9BTM1 129 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 TEX15Q9BXT5 2789 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 ZNF700Q9H0M5 742 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 ARL15Q9NXU5 204 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 PTGFRNQ9P2B2 879 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 IKZF3Q9UKT9 509 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 SAR1BQ9Y6B6 198 aa19.38■□□□□ 0.69
SHMT1-209ENST00000582653 DYTNA2CJ06 578 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 H0YIG0 161 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 E2F3O00716 465 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 TP73O15350 636 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 WFS1O76024 890 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 IL1RNP18510 177 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 TNFSF10P50591 281 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 ARG2P78540 354 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 MEF2AQ02078 507 aaPredicted RBP19.37■□□□□ 0.69
SHMT1-209ENST00000582653 STEAP4Q687X5 459 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 LCTLQ6UWM7 567 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 SLC26A11Q86WA9 606 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 SIRT6Q8N6T7 355 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 KCT2Q8NC54 265 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 ZCCHC10Q8TBK6 192 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 TM4SF19Q96DZ7 209 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 NAPGQ99747 312 aaPredicted RBP19.37■□□□□ 0.69
SHMT1-209ENST00000582653 SLX1AQ9BQ83 275 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 RIC8BQ9NVN3 520 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 PLA2G3Q9NZ20 509 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 HCN3Q9P1Z3 774 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 PYCARDQ9ULZ3 195 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 OSGIN2Q9Y236 505 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 PSAT1Q9Y617 370 aa19.37■□□□□ 0.69
SHMT1-209ENST00000582653 OR2W5A6NFC9 320 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 SGK494L7N484 410 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms