RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 AGTRAPQ6RW13 159 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 PIWIL4Q7Z3Z4 852 aaKnown RBP13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 VN1R4Q7Z5H5 301 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 ZC3H7AQ8IWR0 971 aaKnown RBP13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 PARP9Q8IXQ6 854 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 SLC35F6Q8N357 371 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 EEF1AKMT1Q8WVE0 214 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 HIST1H2AHQ96KK5 128 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 PRAP1Q96NZ9 151 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 OR1F2PQ96R84 312 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 HIST1H2AJQ99878 128 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 H2AFJQ9BTM1 129 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 TRIM54Q9BYV2 358 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 ZNF160Q9HCG1 818 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 IARS2Q9NSE4 1012 aaKnown RBP13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 RNF14Q9UBS8 474 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 C19orf25Q9UFG5 118 aaPredicted RBP13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 NTNG1Q9Y2I2 539 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 SCN3AQ9NY46 2000 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 MYO9AB2RTY4 2548 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 E2F3O00716 465 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 ALOX12BO75342 701 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 KLHL18O94889 574 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 SYF2O95926 243 aaKnown RBP13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 HEXBP07686 556 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 SLC35G6P0C7Q6 338 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 NPPBP16860 134 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 BCL6P41182 706 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 GLRBP48167 497 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 TNFSF10P50591 281 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 MPP1Q00013 466 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 DHX9Q08211 1270 aaKnown RBP13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 PWP1Q13610 501 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 HERC3Q15034 1050 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 PCOLCEQ15113 449 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 HIF1AQ16665 826 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 TEDDM1Q5T9Z0 273 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 ZNF324BQ6AW86 544 aaPredicted RBP13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 PLAG1Q6DJT9 500 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 CAPN13Q6MZZ7 669 aaPredicted RBP13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 SHISA6Q6ZSJ9 500 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 MAMDC2Q7Z304 686 aaPredicted RBP13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 AFAP1L2Q8N4X5 818 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 DTWD1Q8N5C7 304 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 METTL27Q8N6F8 245 aaPredicted RBP13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 BCORP1Q8N888 145 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 PPFIBP2Q8ND30 876 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 PLPP5Q8NEB5 264 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 OR56A3Q8NH54 315 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 DNAJB8Q8NHS0 232 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 PRR7Q8TB68 274 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 METTL21AQ8WXB1 218 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 C5orf34Q96MH7 638 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 LUZP4Q9P127 313 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 ASIC3Q9UHC3 531 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 TEKT2Q9UIF3 430 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 ERRFI1Q9UJM3 462 aaPredicted RBP13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 TEX264Q9Y6I9 313 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 PCNX1Q96RV3 2341 aa13.73□□□□□ -0.21
SMARCE1-216ENST00000580419 A0A0A6YYC8 382 aaPredicted RBP13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 CCDC188H7C350 402 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 I3L1I5 382 aaPredicted RBP13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 P2RX6O15547 441 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 STSP08842 583 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 C8orf89P0DMQ9 161 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 AHRP35869 848 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 PER3P56645 1201 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 CDKL1Q00532 357 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 MEF2AQ02078 507 aaPredicted RBP13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 CDC16Q13042 620 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.72□□□□□ -0.213e-7■■□□□ 12.7
SMARCE1-216ENST00000580419 C4orf17Q53FE4 359 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 FAM45BPQ6NSW5 357 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 PAQR3Q6TCH7 311 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 ADCK2Q7Z695 626 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 LGI4Q8N135 537 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 TBC1D19Q8N5T2 526 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 MFSD9Q8NBP5 474 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 FAM45AQ8TCE6 357 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 GRHL3Q8TE85 626 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 FBXL8Q96CD0 374 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 CYTH2Q99418 400 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 DDX47Q9H0S4 455 aaKnown RBP13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 PLAC1Q9HBJ0 212 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 MKL2Q9ULH7 1088 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 VWA7Q9Y334 891 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 CSAG2Q9Y5P2 127 aa13.72□□□□□ -0.21
SMARCE1-216ENST00000580419 TRBC2A0A5B9 178 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 MASP2O00187 686 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 CCR8P51685 355 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 CDKN2DP55273 166 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 TSTA3Q13630 321 aaPredicted RBP13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 EXT1Q16394 746 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 MSS51Q4VC12 460 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 HIBCHQ6NVY1 386 aaPredicted RBP13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 FAM180AQ6UWF9 173 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 ASPGQ86U10 573 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 SLC26A11Q86WA9 606 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 SLC34A3Q8N130 599 aa13.71□□□□□ -0.21
SMARCE1-216ENST00000580419 OR51Q1Q8NH59 317 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms