RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ZNF235Q14590 738 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 Q5BKY6 102 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 CARD16Q5EG05 197 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 MANEALQ5VSG8 457 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 SCD5Q86SK9 330 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF683Q8IZ20 524 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 SDR16C5Q8N3Y7 309 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF548Q8NEK5 533 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 POF1BQ8WVV4 589 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 LINGO1Q96FE5 620 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 HHIPL1Q96JK4 782 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 OR2A14Q96R47 310 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 SPATA9Q9BWV2 254 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 TMEM245Q9H330 911 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 WWOXQ9NZC7 414 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 TMEFF2Q9UIK5 374 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 E9PAM4 449 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 TLR5O60602 858 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 CDRT1O95170 752 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 EFEMP2O95967 443 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 S1PR4O95977 384 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 RENBPP51606 427 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 IL2P60568 153 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 IL18Q14116 193 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 BAK1Q16611 211 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 SETMARQ53H47 684 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 TYW3Q6IPR3 259 aaKnown RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 DLEU7Q6UYE1 221 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 KRTCAP2Q8N6L1 136 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 OR2T11Q8NH01 316 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 SLC39A8Q9C0K1 460 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 RACGAP1Q9H0H5 632 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 MED28Q9H204 178 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 DCAF13Q9NV06 445 aaKnown RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PRAMEF33A0A0G2JMD5 474 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 TEX51A0A1B0GUA7 166 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PIPSLA2A3N6 862 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PRAMEF10O60809 474 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 UGT2B17O75795 530 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PRSS23O95084 383 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 C9P02748 559 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 TP53P04637 393 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 IFNA16P05015 189 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 SLC2A2P11168 524 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 JUNDP17535 347 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 TGFBR2P37173 567 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 FAM189BP81408 668 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 EFR3AQ14156 821 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 GALEQ14376 348 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 FGFBP1Q14512 234 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 FLYWCH1Q4VC44 716 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 RFTN2Q52LD8 501 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 RSPO2Q6UXX9 243 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PTCHD4Q6ZW05 846 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PHYKPLQ8IUZ5 450 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 KIAA1958Q8N8K9 716 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 OR13C4Q8NGS5 318 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 BRSK1Q8TDC3 778 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 RIT1Q92963 219 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF566Q969W8 418 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 C11orf54Q9H0W9 315 aaPredicted RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 AP3M1Q9Y2T2 418 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 CMAHPQ9Y471 501 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 SESN1Q9Y6P5 492 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 A3GALT2U3KPV4 340 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 DENND4CQ5VZ89 1909 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 CLCA1A8K7I4 914 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 H3BQ06 376 aaPredicted RBP9.27□□□□□ -0.92
CCDC40-212ENST00000574799 MYL12BO14950 172 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 MATN3O15232 486 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 ULK1O75385 1050 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 CKMT1AP12532 417 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 HOXB8P17481 243 aaPredicted RBP9.27□□□□□ -0.92
CCDC40-212ENST00000574799 EFNA1P20827 205 aaPredicted RBP9.27□□□□□ -0.92
CCDC40-212ENST00000574799 CD6P30203 668 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 MAP2K3P46734 347 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 AP2S1P53680 142 aaPredicted RBP9.27□□□□□ -0.92
CCDC40-212ENST00000574799 CDC42P60953 191 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 RPA4Q13156 261 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 MAD2L1Q13257 205 aaPredicted RBP9.27□□□□□ -0.92
CCDC40-212ENST00000574799 TBCEQ15813 527 aaPredicted RBP9.27□□□□□ -0.92
CCDC40-212ENST00000574799 ZC3H12BQ5HYM0 836 aaKnown RBP9.27□□□□□ -0.92
CCDC40-212ENST00000574799 DDI2Q5TDH0 399 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 BHLHB9Q6PI77 547 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 ARSKQ6UWY0 536 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 COMMD7Q86VX2 200 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 TTC9BQ8N6N2 239 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 OR6C4Q8NGE1 309 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 OR4L1Q8NH43 312 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 NTAN1Q96AB6 310 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 B3GALT6Q96L58 329 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 MRGPRX2Q96LB1 330 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 ADAM2Q99965 735 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 NMUR1Q9HB89 426 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 LATS2Q9NRM7 1088 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 TMEM161AQ9NX61 479 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 MS4A12Q9NXJ0 267 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 TBC1D24Q9ULP9 559 aa9.27□□□□□ -0.92
CCDC40-212ENST00000574799 NAALAD2Q9Y3Q0 740 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms