RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ITGA1P56199 1179 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 SH3BP2P78314 561 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 ZIC1Q15915 447 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 ADCK2Q7Z695 626 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 TMEM151AQ8N4L1 468 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 BANPQ8N9N5 519 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 USP7Q93009 1102 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 NEIL2Q969S2 332 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 AIF1LQ9BQI0 150 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 C1QTNF3Q9BXJ4 246 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 ABCF3Q9NUQ8 709 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 PILRAQ9UKJ1 303 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 ANGPTL3Q9Y5C1 460 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 PCDHB3Q9Y5E6 796 aa19.71■□□□□ 0.75
VPS53-210ENST00000571456 IGKV1-8A0A0C4DH67 115 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 H7BY64 318 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 CCNT2O60583 730 aaKnown RBP19.7■□□□□ 0.74
VPS53-210ENST00000571456 UGDHO60701 494 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 FAM87AP0C7U9 286 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 ETV5P41161 510 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 EMP3P54852 163 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 LAPTM5Q13571 262 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 MAP7Q14244 749 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 TBCCQ15814 346 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 PAGE2BQ5JRK9 111 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 ATG9BQ674R7 924 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 NXPE4Q6UWF7 544 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 MCATQ8IVS2 390 aaKnown RBP19.7■□□□□ 0.74
VPS53-210ENST00000571456 HOMEZQ8IX15 550 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 C4orf33Q8N1A6 199 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 ZNF655Q8N720 491 aaPredicted RBP19.7■□□□□ 0.74
VPS53-210ENST00000571456 PTGR2Q8N8N7 351 aaPredicted RBP19.7■□□□□ 0.74
VPS53-210ENST00000571456 RERGQ96A58 199 aaPredicted RBP19.7■□□□□ 0.74
VPS53-210ENST00000571456 WDR34Q96EX3 536 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 MAGEB10Q96LZ2 347 aaPredicted RBP19.7■□□□□ 0.74
VPS53-210ENST00000571456 ZNF285Q96NJ3 590 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 PRAP1Q96NZ9 151 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 EFCAB11Q9BUY7 163 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 KLHL25Q9H0H3 589 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 FAM60AQ9NP50 221 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 SRPK3Q9UPE1 567 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 STK38LQ9Y2H1 464 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 CENPEQ02224 2701 aa19.7■□□□□ 0.74
VPS53-210ENST00000571456 TMEM150CB9EJG8 249 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 E7EQ34 232 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 PLIN3O60664 434 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 OR2B3O76000 313 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 CASP2P42575 452 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 CSNK1G2P78368 415 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 ASPHQ12797 758 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 E2F2Q14209 437 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 KCNAB1Q14722 419 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 MANEAQ5SRI9 462 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 KRT78Q8N1N4 520 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 TTLQ8NG68 377 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 UBE2E3Q969T4 207 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 SELENOSQ9BQE4 189 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 NLNQ9BYT8 704 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 ACBD3Q9H3P7 528 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 CENPHQ9H3R5 247 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 WDR70Q9NW82 654 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 CUEDC1Q9NWM3 386 aaPredicted RBP19.69■□□□□ 0.74
VPS53-210ENST00000571456 COPG2Q9UBF2 871 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 PLLPQ9Y342 182 aa19.69■□□□□ 0.74
VPS53-210ENST00000571456 TMEM184BQ9Y519 407 aaPredicted RBP19.69■□□□□ 0.74
VPS53-210ENST00000571456 TRBC2A0A5B9 178 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 CLEC18AA5D8T8 446 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 ENO4A6NNW6 628 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 C9orf172C9J069 976 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 PROCP04070 461 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 SBK3P0C264 359 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 C1GALT1C1LP0DN25 315 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 MYL2P10916 166 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 CDH1P12830 882 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 SLC5A2P31639 672 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 GDF5P43026 501 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 ARSFP54793 590 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 HERVK_113P63132 956 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 GRM7Q14831 915 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 GPR19Q15760 415 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 FAM214AQ32MH5 1076 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 FBXO42Q6P3S6 717 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 CLEC18BQ6UXF7 455 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 SLCO4C1Q6ZQN7 724 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 FAM20CQ8IXL6 584 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 SNX31Q8N9S9 440 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 CLEC18CQ8NCF0 446 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 SREK1Q8WXA9 508 aaKnown RBP19.68■□□□□ 0.74
VPS53-210ENST00000571456 PTCD3Q96EY7 689 aaKnown RBP19.68■□□□□ 0.74
VPS53-210ENST00000571456 LRFN5Q96NI6 719 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 ERVK-6Q9BXR3 956 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 NT5DC2Q9H857 520 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 MAN2B2Q9Y2E5 1009 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 B3GALT1Q9Y5Z6 326 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 SEC16AO15027 2179 aa19.68■□□□□ 0.74
VPS53-210ENST00000571456 SPTBP11277 2137 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 PMS2P1A4D2B8 440 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 A8MT66 165 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 STMND1H3BQB6 276 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 H3BQF6 201 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms