RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GPR42O15529 346 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 CEACAM4O75871 244 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 ANXA5P08758 320 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 SLC26A3P40879 764 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 GDF5P43026 501 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 KCNC1P48547 511 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 CCR8P51685 355 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 OR4D1Q15615 310 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 VWA2Q5GFL6 755 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 MED25Q71SY5 747 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 CMC1Q7Z7K0 106 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 ADAMTSL2Q86TH1 951 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 LAPTM4BQ86VI4 370 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 THOC6Q86W42 341 aaKnown RBP14.29□□□□□ -0.12
VPS39-210ENST00000568357 SHISA5Q8N114 240 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 AMER3Q8N944 861 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 ZNF740Q8NDX6 193 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 STT3BQ8TCJ2 826 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 NEIL2Q969S2 332 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 RHBDF1Q96CC6 855 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 MRRFQ96E11 262 aaKnown RBP14.29□□□□□ -0.12
VPS39-210ENST00000568357 THAP11Q96EK4 314 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 TSNARE1Q96NA8 513 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 IP6K3Q96PC2 410 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 EGFL8Q99944 293 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 MLXIPLQ9NP71 852 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 ZNF282Q9UDV7 671 aaPredicted RBP14.29□□□□□ -0.12
VPS39-210ENST00000568357 CDC14AQ9UNH5 594 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 IGLV3-12A0A075B6K2 115 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 HMX2A2RU54 273 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 NCF1BA6NI72 391 aaPredicted RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 NCF1CA8MVU1 366 aaPredicted RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 TAPBPO15533 448 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 ZGLP1P0C6A0 271 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 SLC35E2BP0CK96 405 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 NCF1P14598 390 aaPredicted RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 FBLP22087 321 aaKnown RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 MMP11P24347 488 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 OCA2Q04671 838 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 KLC1Q07866 573 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 DLG1Q12959 904 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 NAB1Q13506 487 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 DSG2Q14126 1118 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 FAM53BQ14153 422 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 CSHL1Q14406 222 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 TGFBIQ15582 683 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 SYT16Q17RD7 645 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 C4orf17Q53FE4 359 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 DCAF10Q5QP82 559 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 LRRK2Q5S007 2527 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 ASB18Q6ZVZ8 466 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 PRSS58Q8IYP2 241 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 MFSD9Q8NBP5 474 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 KCT2Q8NC54 265 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 FDCSPQ8NFU4 85 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 SLC13A3Q8WWT9 602 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 SLC5A11Q8WWX8 675 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 MIEF2Q96C03 454 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 MOCOSQ96EN8 888 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 MVB12AQ96EY5 273 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 MMABQ96EY8 250 aaPredicted RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 MESP1Q9BRJ9 268 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 SLC25A23Q9BV35 468 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 SARGQ9BW04 601 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 FAM129AQ9BZQ8 928 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 DRC3Q9H069 523 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 SPNS1Q9H2V7 528 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 MTRF1LQ9UGC7 380 aaKnown RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 NXT1Q9UKK6 140 aaKnown RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 TLN1Q9Y490 2541 aaKnown RBP14.28□□□□□ -0.12
VPS39-210ENST00000568357 HS3ST3B1Q9Y662 390 aa14.28□□□□□ -0.12
VPS39-210ENST00000568357 PCM1Q15154 2024 aa14.27□□□□□ -0.12
VPS39-210ENST00000568357 PEX12O00623 359 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 SOCS6O14544 535 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 OR1F1O43749 312 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 GRK3P35626 688 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 SLC6A12P48065 614 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 HNMTP50135 292 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 RRADP55042 308 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 ATP6V0D1P61421 351 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 MAT1AQ00266 395 aaKnown RBP14.27□□□□□ -0.13
VPS39-210ENST00000568357 SLMAPQ14BN4 828 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 NDUFA9Q16795 377 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 HIST2H2BCQ6DN03 193 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 TMEM214Q6NUQ4 689 aaKnown RBP14.27□□□□□ -0.13
VPS39-210ENST00000568357 KIRREL2Q6UWL6 708 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 FRA10AC1Q70Z53 315 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 PRSS41Q7RTY9 318 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 ASPGQ86U10 573 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 GPSM1Q86YR5 675 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 CEP112Q8N8E3 955 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 CAMKVQ8NCB2 501 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 OR9A4Q8NGU2 314 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 NACC2Q96BF6 587 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 FER1L6-AS2Q96M78 137 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 CYTH2Q99418 400 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 NUDT9Q9BW91 350 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 YIPF2Q9BWQ6 316 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 CDC42EP4Q9H3Q1 356 aaKnown RBP14.27□□□□□ -0.13
VPS39-210ENST00000568357 ACSS3Q9H6R3 686 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms