RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 NDUFAF7Q7L592 441 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 VN1R4Q7Z5H5 301 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 SLC26A11Q86WA9 606 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 FAM26EQ8N5C1 309 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 NKAPQ8N5F7 415 aaKnown RBP19.67■□□□□ 0.74
CLN3-219ENST00000565778 OR56A3Q8NH54 315 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 SLC13A3Q8WWT9 602 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 FBXL8Q96CD0 374 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 SNRNP40Q96DI7 357 aaKnown RBP19.67■□□□□ 0.74
CLN3-219ENST00000565778 NSMCE4AQ9NXX6 385 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 MKL2Q9ULH7 1088 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 SETXQ7Z333 2677 aaKnown RBP19.67■□□□□ 0.74
CLN3-219ENST00000565778 FAM95CA0A1B0GW59 222 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 H0YIG0 161 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 ENO2P09104 434 aaPredicted RBP19.66■□□□□ 0.74
CLN3-219ENST00000565778 BCL6P41182 706 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 CCR8P51685 355 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 ZXDCQ2QGD7 858 aaPredicted RBP19.66■□□□□ 0.74
CLN3-219ENST00000565778 ASPGQ86U10 573 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 KBTBD2Q8IY47 623 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 DNAJB14Q8TBM8 379 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 TM4SF19Q96DZ7 209 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 C19orf60Q96EN9 201 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 VPS39Q96JC1 886 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 FAM129AQ9BZQ8 928 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 EPS8L2Q9H6S3 715 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 SAYSD1Q9NPB0 183 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 WHRNQ9P202 907 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLN3-219ENST00000565778 HEATR5BQ9P2D3 2071 aa19.66■□□□□ 0.74
CLN3-219ENST00000565778 NBASA2RRP1 2371 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 OR1F1O43749 312 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 BMP10O95393 424 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 NSA2O95478 260 aaKnown RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 SLC12A2P55011 1212 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 TAS2R39P59534 338 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 SNRPNP63162 240 aaKnown RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 MEF2AQ02078 507 aaPredicted RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 EEF1A2Q05639 463 aaKnown RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 SRSF1Q07955 248 aaKnown RBP eCLIP19.65■□□□□ 0.74
CLN3-219ENST00000565778 C2orf54Q08AI8 447 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 CBLBQ13191 982 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 CSHL1Q14406 222 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 MFSD4BQ5TF39 518 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 TMEM214Q6NUQ4 689 aaKnown RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 Q6ZS92 163 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 PRSS41Q7RTY9 318 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 C17orf53Q8N3J3 647 aaPredicted RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 TBC1D19Q8N5T2 526 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 MFSD9Q8NBP5 474 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 KCT2Q8NC54 265 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 ABHD11Q8NFV4 315 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 ZCCHC10Q8TBK6 192 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 WDR77Q9BQA1 342 aaPredicted RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 SLC29A3Q9BZD2 475 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 ANKHQ9HCJ1 492 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 IKZF3Q9UKT9 509 aa19.65■□□□□ 0.74
CLN3-219ENST00000565778 NOVA2Q9UNW9 492 aaKnown RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 COPG1Q9Y678 874 aaKnown RBP19.65■□□□□ 0.74
CLN3-219ENST00000565778 CLEC18AA5D8T8 446 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 TCP11X1B4DZS4 312 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 SGK494L7N484 410 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 CDC7O00311 574 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 PCDH17O14917 1159 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 RAD51CO43502 376 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 PIAS1O75925 651 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 ZNF37AP17032 561 aaPredicted RBP19.64■□□□□ 0.73
CLN3-219ENST00000565778 IL1RNP18510 177 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 SSTR1P30872 391 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 ETF1P62495 437 aaKnown RBP19.64■□□□□ 0.73
CLN3-219ENST00000565778 ZNF460Q14592 562 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 FHL5Q5TD97 284 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 IGFL2Q6UWQ7 119 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 CLEC18BQ6UXF7 455 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 ISLR2Q6UXK2 745 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 SYT10Q6XYQ8 523 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 LINC00696Q6ZRV3 163 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 ZC3H7AQ8IWR0 971 aaKnown RBP19.64■□□□□ 0.73
CLN3-219ENST00000565778 CLEC18CQ8NCF0 446 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 OR4K1Q8NGD4 311 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 OR51Q1Q8NH59 317 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 METTL21AQ8WXB1 218 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 ANKRD7Q92527 254 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 OR4K3Q96R72 315 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 LMF1Q96S06 567 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 ASF1BQ9NVP2 202 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 TXNDC16Q9P2K2 825 aa19.64■□□□□ 0.73
CLN3-219ENST00000565778 UTP11Q9Y3A2 253 aaKnown RBP19.64■□□□□ 0.73
CLN3-219ENST00000565778 MDC1Q14676 2089 aaKnown RBP19.63■□□□□ 0.73
CLN3-219ENST00000565778 IGHV1-45A0A0A0MS14 117 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 EIF3HO15372 352 aaKnown RBP eCLIP19.63■□□□□ 0.73
CLN3-219ENST00000565778 JRKO75564 520 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 KLHL18O94889 574 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 SERPIND1P05546 499 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 SLC35G6P0C7Q6 338 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 COX6A1P12074 109 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 MINDY4Q4G0A6 757 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 CATSPEREQ5SY80 951 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 SBSNQ6UWP8 590 aa19.63■□□□□ 0.73
CLN3-219ENST00000565778 CUZD1Q86UP6 607 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms