RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PCDHGA9Q9Y5G4 932 aaKnown RBP12.75□□□□□ -0.37
CLK3-213ENST00000563842 MAU2Q9Y6X3 613 aa12.75□□□□□ -0.37
CLK3-213ENST00000563842 A0A087X1B8 175 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 FEZF1A0PJY2 475 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 VSTM2BA6NLU5 285 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 H0YIG0 161 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 H2AFYO75367 372 aaKnown RBP12.74□□□□□ -0.37
CLK3-213ENST00000563842 INHBAP08476 426 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 LTA4HP09960 611 aaKnown RBP12.74□□□□□ -0.37
CLK3-213ENST00000563842 GNAZP19086 355 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 MMP11P24347 488 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 CXCR2P25025 360 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 AHRP35869 848 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 CCL11P51671 97 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 SKP1P63208 163 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 ATP1A4Q13733 1029 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 UAP1Q16222 522 aaPredicted RBP12.74□□□□□ -0.37
CLK3-213ENST00000563842 ZXDCQ2QGD7 858 aaPredicted RBP12.74□□□□□ -0.37
CLK3-213ENST00000563842 MROH9Q5TGP6 573 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 NIPAL1Q6NVV3 410 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 COX15Q7KZN9 410 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 MRGPREQ86SM8 312 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 KLHDC8AQ8IYD2 350 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 METTL27Q8N6F8 245 aaPredicted RBP12.74□□□□□ -0.37
CLK3-213ENST00000563842 CLEC1AQ8NC01 280 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 STT3BQ8TCJ2 826 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 SLC13A3Q8WWT9 602 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 NEIL2Q969S2 332 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 TM4SF19Q96DZ7 209 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 OR4K3Q96R72 315 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 SPSB2Q99619 263 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 SLC25A23Q9BV35 468 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 YIPF2Q9BWQ6 316 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 MKKSQ9NPJ1 570 aaPredicted RBP12.74□□□□□ -0.37
CLK3-213ENST00000563842 C14orf105Q9NVL8 296 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 WWOXQ9NZC7 414 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 CD274Q9NZQ7 290 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 RNF112Q9ULX5 631 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 SH2B3Q9UQQ2 575 aa12.74□□□□□ -0.37
CLK3-213ENST00000563842 CNTRLQ7Z7A1 2325 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 IGLV3-12A0A075B6K2 115 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 A0A087WUV0 522 aaPredicted RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 URADA6NGE7 173 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 NCF1BA6NI72 391 aaPredicted RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 NCF1CA8MVU1 366 aaPredicted RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 AGPSO00116 658 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 PCDH17O14917 1159 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 P2RX6O15547 441 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 OR1F1O43749 312 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 LCMT2O60294 686 aaKnown RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 CNOT3O75175 753 aaKnown RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 WDR47O94967 919 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 MED26O95402 600 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 NSA2O95478 260 aaKnown RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 ACSL3O95573 720 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 UMODP07911 640 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 ZGLP1P0C6A0 271 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 SLC35E2BP0CK96 405 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 NCF1P14598 390 aaPredicted RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 CNTFP26441 200 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 GGT5P36269 586 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 BCL6P41182 706 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 SERPINB8P50452 374 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 SERPINB9P50453 376 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 RGS1Q08116 209 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 PWP1Q13610 501 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 EFTUD2Q15029 972 aaKnown RBP eCLIP12.73□□□□□ -0.375e-8■■■■□ 22.1
CLK3-213ENST00000563842 RBBP7Q16576 425 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 FAM83EQ2M2I3 478 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 FAM69BQ5VUD6 431 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 NXPE4Q6UWF7 544 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 VN1R4Q7Z5H5 301 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 CMC1Q7Z7K0 106 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 TMPRSS11BQ86T26 416 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 HPS6Q86YV9 775 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 CNPY4Q8N129 248 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 SPATA6LQ8N4H0 392 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 TRPV3Q8NET8 790 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 MRRFQ96E11 262 aaKnown RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 CRB3Q9BUF7 120 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 UNKQ9C0B0 810 aaKnown RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 SOX17Q9H6I2 414 aaPredicted RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 ANKHQ9HCJ1 492 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 ZNF71Q9NQZ8 489 aaPredicted RBP12.73□□□□□ -0.37
CLK3-213ENST00000563842 P4HTMQ9NXG6 502 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 GPRC5BQ9NZH0 403 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 TRPC4Q9UBN4 977 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 CTSFQ9UBX1 484 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 ANAPC2Q9UJX6 822 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 TP53TG5Q9Y2B4 290 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 MAP4K5Q9Y4K4 846 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 SLC22A7Q9Y694 548 aa12.73□□□□□ -0.37
CLK3-213ENST00000563842 A0A0A6YYC8 382 aaPredicted RBP12.72□□□□□ -0.37
CLK3-213ENST00000563842 SYCE1LA8MT33 242 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 I3L1I5 382 aaPredicted RBP12.72□□□□□ -0.37
CLK3-213ENST00000563842 CLGNO14967 610 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 FOXS1O43638 330 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 STK16O75716 305 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 CEACAM4O75871 244 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 KRT38O76015 456 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms