RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 HCN2Q9UL51 889 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 EXOSC1Q9Y3B2 195 aaKnown RBP12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 SMCO3A2RU48 225 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 BTBD19C9JJ37 291 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 BCHEP06276 602 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 ZBTB48P10074 688 aaPredicted RBP12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 GLDCP23378 1020 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 IL1R2P27930 398 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 RPS24P62847 133 aaKnown RBP12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 OCLNQ16625 522 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 SIRPB2Q5JXA9 342 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 FBXL22Q6P050 247 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 CEACAM20Q6UY09 585 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 LRRTM4Q86VH4 590 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 OR2AP1Q8NGE2 309 aa12.84□□□□□ -0.35
CSPG4P11-201ENST00000560634 PLIN4Q96Q06 1357 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 CXorf49A8MYA2 514 aaPredicted RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SAP18O00422 153 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 TLX2O43763 284 aaPredicted RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 OPN1SWP03999 348 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 NRIP1P48552 1158 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 KCNC4Q03721 635 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SLC2A7Q6PXP3 512 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 GALNT12Q8IXK2 581 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 HDDC3Q8N4P3 179 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 JAGN1Q8N5M9 183 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 BPIFB1Q8TDL5 484 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 TSSK6Q9BXA6 273 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SLC22A14Q9Y267 594 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 H0YGN5 161 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 XPNPEP2O43895 674 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 GRSF1Q12849 480 aaKnown RBP eCLIP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 PAFAH1B3Q15102 231 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SCGB2B2Q4G0G5 96 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 NPAS3Q8IXF0 933 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 PRSS58Q8IYP2 241 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 AQP11Q8NBQ7 271 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 OR4F6Q8NGB9 312 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SCAMP5Q8TAC9 235 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 CLEC4CQ8WTT0 213 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 DPYSL5Q9BPU6 564 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 GTPBP2Q9BX10 602 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 ZNF471Q9BX82 626 aaPredicted RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 IRF2BPLQ9H1B7 796 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 NLGN3Q9NZ94 848 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 TMEM59LQ9UK28 342 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 MT-ND5P03915 603 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 KLK1P06870 262 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 GLP1RP43220 463 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 NUDT6P53370 316 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 MPP2Q14168 576 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 OGFRL1Q5TC84 451 aaPredicted RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 GRHL2Q6ISB3 625 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 PLA2G15Q8NCC3 412 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 OSTF1Q92882 214 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 DGAT2Q96PD7 388 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 TM9SF2Q99805 663 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 C14orf166Q9Y224 244 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 NOP16Q9Y3C1 178 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 DISC1C4P0D8 188 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SLC33A1O00400 549 aaPredicted RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SLITRK5O94991 958 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 ATP1B2P14415 290 aaPredicted RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SMPD1P17405 629 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 SLC6A6P31641 620 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 GDI2P50395 445 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 CHRNA6Q15825 494 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 THOC6Q86W42 341 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 OR52E4Q8NGH9 312 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 OVCA2Q8WZ82 227 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 HDAC2Q92769 488 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 HSH2DQ96JZ2 352 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 RIOK2Q9BVS4 552 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 TRMT61BQ9BVS5 477 aaKnown RBP12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 ASPNQ9BXN1 380 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 XKR8Q9H6D3 395 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 PIGVQ9NUD9 493 aa12.83□□□□□ -0.36
CSPG4P11-201ENST00000560634 TCRBV7S3A2A0A539 114 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 SOWAHBA6NEL2 793 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 H0YAE9 185 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 CCRL2O00421 344 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 SCDO00767 359 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 CSN2P05814 226 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 IFI30P13284 250 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 STOML3Q8TAV4 291 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 FBXL18Q96ME1 805 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 VSTM5A8MXK1 200 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 ANKRD66B4E2M5 251 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 LOC730098B7Z3J9 87 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 E7EQ34 232 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 J3QLW9 94 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 J3QRK9 145 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 TNFRSF10BO14763 440 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 EPOP01588 193 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 ACP5P13686 325 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 ZNF19P17023 458 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 SLC6A9P48067 706 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 DNAJB13P59910 316 aa12.82□□□□□ -0.36
CSPG4P11-201ENST00000560634 UFM1P61960 85 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms