RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 KCNE1BA0A087WTH5 132 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 ZSCAN9O15535 394 aaPredicted RBP20.79■□□□□ 0.92
SNX1-210ENST00000560260 ZNF749O43361 778 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 OR1F1O43749 312 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 STK17BO94768 372 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 NTRK1P04629 796 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 EIF2S1P05198 315 aaKnown RBP20.79■□□□□ 0.92
SNX1-210ENST00000560260 ALDH3A1P30838 453 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 CCR10P46092 362 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 PIK3CGP48736 1102 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 ERVPABLB-1P60509 514 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 TMEM164Q5U3C3 297 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 UNQ6494/PRO21346Q6UXR6 183 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 TIPARPQ7Z3E1 657 aaKnown RBP20.79■□□□□ 0.92
SNX1-210ENST00000560260 TMEM126BQ8IUX1 230 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.79■□□□□ 0.92
SNX1-210ENST00000560260 ARHGEF39Q8N4T4 335 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 DTWD1Q8N5C7 304 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 CSNK1A1LQ8N752 337 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 ZNF578Q96N58 590 aaPredicted RBP20.79■□□□□ 0.92
SNX1-210ENST00000560260 CDK15Q96Q40 435 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 ULBP3Q9BZM4 244 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 DKK4Q9UBT3 224 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 MID2Q9UJV3 735 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 SERTAD3Q9UJW9 196 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 ACSL6Q9UKU0 697 aa20.79■□□□□ 0.92
SNX1-210ENST00000560260 TMEM184BQ9Y519 407 aaPredicted RBP20.79■□□□□ 0.92
SNX1-210ENST00000560260 FITM1A5D6W6 292 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 SRPX2O60687 465 aaPredicted RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 SUPT7LO94864 414 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 GRK3P35626 688 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 DNAJB13P59910 316 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 CLCQ05315 142 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 VN1R5Q7Z5H4 357 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 GPR135Q8IZ08 494 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 TM4SF19Q96DZ7 209 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 CCDC126Q96EE4 140 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 THAP11Q96EK4 314 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 PKNOX2Q96KN3 472 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 C10orf90Q96M02 699 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 EFCAB11Q9BUY7 163 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 CCDC86Q9H6F5 360 aaKnown RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 KCNK9Q9NPC2 374 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 IRAK4Q9NWZ3 460 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 ZNF225Q9UK10 706 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 ZNF490Q9ULM2 529 aaPredicted RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 RUVBL1Q9Y265 456 aaKnown RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 MRPS2Q9Y399 296 aaKnown RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 RNF11Q9Y3C5 154 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 PCDHB3Q9Y5E6 796 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 FER1L5A0AVI2 2057 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 KATNA1O75449 491 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 DHRS4L1P0CG22 281 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 NAGLUP54802 743 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 CYP4F2P78329 520 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 GPS2Q13227 327 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 RBBP5Q15291 538 aaKnown RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 TCTE1Q5JU00 501 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 LIPMQ5VYY2 423 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 GRHL2Q6ISB3 625 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 TLDC1Q6P9B6 456 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 TMIGD1Q6UXZ0 262 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 ASPGQ86U10 573 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 CCNYL1Q8N7R7 359 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 L3MBTL4Q8NA19 623 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 TRPC4APQ8TEL6 797 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 ATP6V1G3Q96LB4 118 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 GATA5Q9BWX5 397 aaPredicted RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 ACTR8Q9H981 624 aa20.78■□□□□ 0.92
SNX1-210ENST00000560260 ACTR5Q9H9F9 607 aaPredicted RBP20.78■□□□□ 0.92
SNX1-210ENST00000560260 CELSR3Q9NYQ7 3312 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 TMEM120BA0PK00 339 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 TM9SF1O15321 606 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 CPNE3O75131 537 aaKnown RBP20.77■□□□□ 0.91
SNX1-210ENST00000560260 H2AFYO75367 372 aaKnown RBP20.77■□□□□ 0.91
SNX1-210ENST00000560260 TBX6O95947 436 aaPredicted RBP20.77■□□□□ 0.91
SNX1-210ENST00000560260 BPGMP07738 259 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 RORAP35398 523 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 GRM7Q14831 915 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 RBBP7Q16576 425 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 ZNF385CQ66K41 422 aaPredicted RBP20.77■□□□□ 0.91
SNX1-210ENST00000560260 LETMD1Q6P1Q0 360 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 FRMD7Q6ZUT3 714 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 ANKRD42Q8N9B4 389 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 GALNT6Q8NCL4 622 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 OR4F6Q8NGB9 312 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 CREB3L4Q8TEY5 395 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 RERGQ96A58 199 aaPredicted RBP20.77■□□□□ 0.91
SNX1-210ENST00000560260 NTMT1Q9BV86 223 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 AICDAQ9GZX7 198 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 NT5DC2Q9H857 520 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 AKIRIN1Q9H9L7 192 aaPredicted RBP20.77■□□□□ 0.91
SNX1-210ENST00000560260 MLXIPLQ9NP71 852 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 DHCR7Q9UBM7 475 aaKnown RBP20.77■□□□□ 0.91
SNX1-210ENST00000560260 ZFP69BQ9UJL9 534 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 AP1M2Q9Y6Q5 423 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 IGF2RP11717 2491 aa20.77■□□□□ 0.91
SNX1-210ENST00000560260 CHD8Q9HCK8 2581 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 AHCTF1Q8WYP5 2266 aa20.76■□□□□ 0.91
SNX1-210ENST00000560260 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms