RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CDKL1Q00532 357 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 GUCY2DQ02846 1103 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 RGS1Q08116 209 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CSHL1Q14406 222 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 PTCHD3Q3KNS1 767 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 C1QTNF12Q5T7M4 302 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 HHATQ5VTY9 493 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ATG14Q6ZNE5 492 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CAPN12Q6ZSI9 719 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 TTLQ8NG68 377 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 OR2Y1Q8NGV0 311 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 CCT6BQ92526 530 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ALKBH8Q96BT7 664 aaKnown RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 FBXL8Q96CD0 374 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 GBP5Q96PP8 586 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 SPRTNQ9H040 489 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF304Q9HCX3 659 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 SEMA3GQ9NS98 782 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 STOX2Q9P2F5 926 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF282Q9UDV7 671 aaPredicted RBP8.29□□□□□ -1.08
USP3-208ENST00000558285 CIDEBQ9UHD4 219 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 ZNF451Q9Y4E5 1061 aa8.29□□□□□ -1.08
USP3-208ENST00000558285 SDK2Q58EX2 2172 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 TCRBV9S1A1TA0A576 114 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 ENO4A6NNW6 628 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 SYCE1LA8MT33 242 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 TERTO14746 1132 aaKnown RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 PRICKLE3O43900 615 aaPredicted RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 RPSAP08865 295 aaKnown RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 FAM87AP0C7U9 286 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 IL10P22301 178 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 IMPA1P29218 277 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 OTX2P32243 289 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 CDKN2DP55273 166 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 RAB10P61026 200 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 CYP4F2P78329 520 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 NAE1Q13564 534 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 FAM53BQ14153 422 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 ZIC1Q15915 447 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 RBM20Q5T481 1227 aaKnown RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 AGBL2Q5U5Z8 902 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 C1orf189Q5VU69 101 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 FCRL6Q6DN72 434 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 TCTN3Q6NUS6 607 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 TRMT10BQ6PF06 316 aaKnown RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 SUSD1Q6UWL2 747 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 CYHR1Q6ZMK1 362 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 OVCH1Q7RTY7 1134 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 IGDCC3Q8IVU1 814 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 AGGF1Q8N302 714 aaeCLIP8.28□□□□□ -1.08
USP3-208ENST00000558285 GBP7Q8N8V2 638 aaPredicted RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 CCDC63Q8NA47 563 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 FBXO25Q8TCJ0 367 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 ARL8AQ96BM9 186 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 PPP1R14BQ96C90 147 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 SEC16BQ96JE7 1060 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 ZNF285Q96NJ3 590 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 ZIM3Q96PE6 472 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 FMO2Q99518 471 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 RBBP8Q99708 897 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 AIF1LQ9BQI0 150 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 SLC25A23Q9BV35 468 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 YIPF2Q9BWQ6 316 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 PITHD1Q9GZP4 211 aaPredicted RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 DERL2Q9GZP9 239 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 DRC3Q9H069 523 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 SLC26A1Q9H2B4 701 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 NMRAL1Q9HBL8 299 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 SLC12A4Q9UP95 1085 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 PDE10AQ9Y233 779 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 PCDHGA9Q9Y5G4 932 aaKnown RBP8.28□□□□□ -1.08
USP3-208ENST00000558285 KCNMB2Q9Y691 235 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 GMEB1Q9Y692 573 aa8.28□□□□□ -1.08
USP3-208ENST00000558285 CACNA1GO43497 2377 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 KCNE1BA0A087WTH5 132 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 A0A087X1B8 175 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 SYNDIG1LA6NDD5 238 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 FAM159BA6NKW6 160 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 DPM1O60762 260 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 ONECUT2O95948 504 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 INHBAP08476 426 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 CNTFP26441 200 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 ALDH3A1P30838 453 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 SSTR1P30872 391 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 GABRA4P48169 554 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 SERPINB9P50453 376 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 TGM3Q08188 693 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 NFATC3Q12968 1075 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 SRSF6Q13247 344 aaKnown RBP8.27□□□□□ -1.09
USP3-208ENST00000558285 LY6DQ14210 128 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 RCN2Q14257 317 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 HERC3Q15034 1050 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 RBBP7Q16576 425 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 FAM83EQ2M2I3 478 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 CCSMST1Q4G0I0 132 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 PAGE2BQ5JRK9 111 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 FAM199XQ6PEV8 388 aaPredicted RBP8.27□□□□□ -1.09
USP3-208ENST00000558285 FAM198BQ6UWH4 519 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 PAQR7Q86WK9 346 aa8.27□□□□□ -1.09
USP3-208ENST00000558285 KRT78Q8N1N4 520 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms