RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MTX3Q5HYI7 312 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PRAMEF14Q5SWL7 426 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PRAMEF13Q5VWM6 474 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3GQ6DHY5 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3CQ6IPX1 549 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 FKBP9P1Q75LS8 142 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PROSER1Q86XN7 944 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 CACUL1Q86Y37 369 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 LAS2Q8IYD9 372 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D3Q8IZP1 549 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-229ENST00000557348 SLC44A3Q8N4M1 653 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 EFCAB3Q8N7B9 438 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 RNF148Q8N7C7 305 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 HIPK4Q8NE63 616 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 OR2T34Q8NGX1 318 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 SLC5A11Q8WWX8 675 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 TMEM125Q96AQ2 219 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PLEKHA8Q96JA3 519 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 MAGED4Q96JG8 741 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 SLC45A3Q96JT2 553 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 OR4K3Q96R72 315 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 GAS2L1Q99501 681 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-229ENST00000557348 KCTD14Q9BQ13 255 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-229ENST00000557348 PELI2Q9HAT8 420 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 KCNK12Q9HB15 430 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 SIRT5Q9NXA8 310 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 HEBP2Q9Y5Z4 205 aa12.2□□□□□ -0.46
SHMT2-229ENST00000557348 ASPDHA6ND91 283 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 C2CD4DB7Z1M9 353 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 MAN2B1O00754 1011 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 GMNNO75496 209 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 SORBS2O94875 1100 aaKnown RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 UMPSP11172 480 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NPPBP16860 134 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 JUNBP17275 347 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 TCN1P20061 433 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 HTR1EP28566 365 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 S100A3P33764 101 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 RPL3P39023 403 aaKnown RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 PLA2G4EQ3MJ16 856 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 FAM174BQ3ZCQ3 159 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NHSL2Q5HYW2 709 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 PAGE3Q5JUK9 113 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NOXRED1Q6NXP6 359 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NXPE4Q6UWF7 544 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 XKR5Q6UX68 686 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 TMPRSS11BQ86T26 416 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 LRRC56Q8IYG6 542 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 OR7G3Q8NG95 312 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 C17orf50Q8WW18 174 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 SMPDL3AQ92484 453 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NEIL2Q969S2 332 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 CXorf40BQ96DE9 158 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 MTFMTQ96DP5 389 aaKnown RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NRBF2Q96F24 287 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 SCARF2Q96GP6 870 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 ITCHQ96J02 903 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 APOOQ9BUR5 198 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 C9orf16Q9BUW7 83 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 MVB12BQ9H7P6 319 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 IL1RL2Q9HB29 575 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 MBNL1Q9NR56 388 aaKnown RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 MAGEL2Q9UJ55 1249 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 MMP17Q9ULZ9 603 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 MAN2B2Q9Y2E5 1009 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 SNX13Q9Y5W8 968 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 TICRRQ7Z2Z1 1910 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 hCG_2014768A0A024R1R8 64 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 FPGTO14772 594 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 PRAMEF4O60810 478 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NTRK1P04629 796 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 GPIP06744 558 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 DDX5P17844 614 aaKnown RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 CDH3P22223 829 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 IDSP22304 550 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 IGFBP4P22692 258 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 HTR1BP28222 390 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 HOXD12P35452 270 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 IGFALSP35858 605 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 ENTPD1P49961 510 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NEK2P51955 445 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 PTGR1Q14914 329 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 FXNQ16595 210 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 RGS21Q2M5E4 152 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 CCSMST1Q4G0I0 132 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 C6orf10Q5SRN2 563 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 PRAMEF9Q5VWM5 478 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NANOGP8Q6NSW7 305 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 FAM83HQ6ZRV2 1179 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 SYT12Q8IV01 421 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 DEFB123Q8N688 67 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 C12orf43Q96C57 262 aaKnown RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 APOLD1Q96LR9 279 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 OR52E6Q96RD3 313 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 SLC39A3Q9BRY0 314 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 PHF7Q9BWX1 381 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-229ENST00000557348 LGR4Q9BXB1 951 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 KCNH6Q9H252 994 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 CAAP1Q9H8G2 361 aa12.19□□□□□ -0.46
SHMT2-229ENST00000557348 NANOGQ9H9S0 305 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms