RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 TMX2-CTNND1H3BSU7 103 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 NTN3O00634 580 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-210ENST00000553950 NDUFAB1O14561 156 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 HAT1O14929 419 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 PIP5K1BO14986 540 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 OR1F1O43749 312 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 PRAMEF4O60810 478 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 RSL1D1O76021 490 aaKnown RBP13.9□□□□□ -0.18
SHMT2-210ENST00000553950 SEMA3DO95025 777 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 MSL3P1P0C860 447 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 THRAP10827 490 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 MYF5P13349 255 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 ST6GAL1P15907 406 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 ARFIP1P53367 373 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 AQP5P55064 265 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 FOXA1P55317 472 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 CCL7P80098 99 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 HSD11B2P80365 405 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 BTKQ06187 659 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 TGM3Q08188 693 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 MAD2L1Q13257 205 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-210ENST00000553950 SMU1Q2TAY7 513 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 XKR7Q5GH72 579 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 PRAMEF9Q5VWM5 478 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 NKAIN2Q5VXU1 208 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 ASCL5Q7RTU5 278 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 TRIM46Q7Z4K8 759 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 PARP9Q8IXQ6 854 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 ANKS4BQ8N8V4 417 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 CAMKVQ8NCB2 501 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 N4BP2L2Q92802 583 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-210ENST00000553950 CMTM7Q96FZ5 175 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 PPP3R2Q96LZ3 170 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 TMEM74Q96NL1 305 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 SERPINI1Q99574 410 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 NUDT22Q9BRQ3 303 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 NUF2Q9BZD4 464 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 DMRT3Q9NQL9 472 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 AKAP7Q9P0M2 348 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-210ENST00000553950 PDP2Q9P2J9 529 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 TRIM33Q9UPN9 1127 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 TIMM22Q9Y584 194 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 PCDHGA4Q9Y5G9 962 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 AP1M2Q9Y6Q5 423 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 MYO15AQ9UKN7 3530 aa13.9□□□□□ -0.18
SHMT2-210ENST00000553950 FAM186AA6NE01 2351 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 A0A0G2JND7 137 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 GOLGA8QA0A0J9YX86 632 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-210ENST00000553950 A0A1W2PQM1 296 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 GOLGA8OA6NCC3 632 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 NPIPB8E9PQR5 432 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 GOLGA8NF8WBI6 632 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 SNX3O60493 162 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 DIAPH2O60879 1101 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 CSRP1P21291 193 aaKnown RBP13.89□□□□□ -0.19
SHMT2-210ENST00000553950 SDHBP21912 280 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 PRPH2P23942 346 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 ARFIP2P53365 341 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 STXBP1P61764 594 aaKnown RBP13.89□□□□□ -0.19
SHMT2-210ENST00000553950 PPP1CAP62136 330 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 SKP1P63208 163 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 PWP1Q13610 501 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 DDX39BQ13838 428 aaKnown RBP13.89□□□□□ -0.19
SHMT2-210ENST00000553950 NR6A1Q15406 480 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 UGT3A2Q3SY77 523 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 ATP6AP1LQ52LC2 224 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 TMEM35AQ53FP2 167 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 SPIN4Q56A73 249 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 TCTE1Q5JU00 501 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 MANEAQ5SRI9 462 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 NIPAL1Q6NVV3 410 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 RBM44Q6ZP01 1051 aaKnown RBP13.89□□□□□ -0.19
SHMT2-210ENST00000553950 ASPGQ86U10 573 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 SRFBP1Q8NEF9 429 aaKnown RBP13.89□□□□□ -0.19
SHMT2-210ENST00000553950 HUS1BQ8NHY5 278 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 BCAS4Q8TDM0 211 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 ACTRT2Q8TDY3 377 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 SLC41A2Q96JW4 573 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 MAELQ96JY0 434 aaKnown RBP13.89□□□□□ -0.19
SHMT2-210ENST00000553950 CCT8L2Q96SF2 557 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 CCDC28BQ9BUN5 200 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 TNFRSF12AQ9NP84 129 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 TMED5Q9Y3A6 229 aa13.89□□□□□ -0.19
SHMT2-210ENST00000553950 DNAH14Q0VDD8 3507 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 LAMA1P25391 3075 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 EP300Q09472 2414 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-210ENST00000553950 A0A088AWK7 358 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 FEZF1A0PJY2 475 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 SLC9B1P1A6NJY1 282 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 ZSCAN9O15535 394 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-210ENST00000553950 GFRA3O60609 400 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 SRPX2O60687 465 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-210ENST00000553950 PDYNP01213 254 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 SERPINA6P08185 405 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 PVRP15151 417 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 ACPPP15309 386 aa13.88□□□□□ -0.19
SHMT2-210ENST00000553950 ZNF10P21506 573 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-210ENST00000553950 PTX3P26022 381 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-210ENST00000553950 MAPK1P28482 360 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms