RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MFSD9Q8NBP5 474 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 CNDP1Q96KN2 507 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 SARGQ9BW04 601 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 FBXO8Q9NRD0 319 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 STARD5Q9NSY2 213 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 RARRES3Q9UL19 164 aa20.27■□□□□ 0.83
VPS29-206ENST00000549578 ZNF490Q9ULM2 529 aaPredicted RBP20.27■□□□□ 0.83
VPS29-206ENST00000549578 POLR1CO15160 346 aaPredicted RBP20.26■□□□□ 0.83
VPS29-206ENST00000549578 NPHS1O60500 1241 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 OR4F21O95013 312 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 EIF2S1P05198 315 aaKnown RBP20.26■□□□□ 0.83
VPS29-206ENST00000549578 CHRNGP07510 517 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 ARRB2P32121 409 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 HNF4AP41235 474 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 ATP1A2P50993 1020 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 CYP4F2P78329 520 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 CAMK2BQ13554 666 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 LAPTM5Q13571 262 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 RCN2Q14257 317 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 VN1R4Q7Z5H5 301 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.26■□□□□ 0.83
VPS29-206ENST00000549578 LSMEM2Q8N112 164 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 TBC1D19Q8N5T2 526 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 AGAP11Q8TF27 550 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 RERGQ96A58 199 aaPredicted RBP20.26■□□□□ 0.83
VPS29-206ENST00000549578 MACROD1Q9BQ69 325 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 SPRTNQ9H040 489 aaPredicted RBP20.26■□□□□ 0.83
VPS29-206ENST00000549578 POLR1BQ9H9Y6 1135 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 MID1IP1Q9NPA3 183 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 IRAK4Q9NWZ3 460 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 WDFY3Q8IZQ1 3526 aa20.26■□□□□ 0.83
VPS29-206ENST00000549578 KCNE1BA0A087WTH5 132 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 P2RX6O15547 441 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 OR2B3O76000 313 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 SERPINE1P05121 402 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 ITGA1P56199 1179 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 IL11RAQ14626 422 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 HIST2H2ACQ16777 129 aaPredicted RBP20.25■□□□□ 0.83
VPS29-206ENST00000549578 ARL13AQ5H913 290 aaPredicted RBP20.25■□□□□ 0.83
VPS29-206ENST00000549578 HIST2H2AA3Q6FI13 130 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 MED27Q6P2C8 311 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 ATG14Q6ZNE5 492 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 PPP1R3BQ86XI6 285 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 TRMOQ9BU70 441 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 DRC3Q9H069 523 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 TNFRSF12AQ9NP84 129 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 SERTAD3Q9UJW9 196 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 STK38LQ9Y2H1 464 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 PCDHGA8Q9Y5G5 932 aa20.25■□□□□ 0.83
VPS29-206ENST00000549578 H3BMH7 237 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 FFAR3O14843 346 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 GPR42O15529 346 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 SRPX2O60687 465 aaPredicted RBP20.24■□□□□ 0.83
VPS29-206ENST00000549578 TNFSF15O95150 251 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 TIAF1O95411 115 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 ADRB1P08588 477 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 PCNAP12004 261 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 FGF5P12034 268 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 PKNOX1P55347 436 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 ZRSR2Q15696 482 aaKnown RBP20.24■□□□□ 0.83
VPS29-206ENST00000549578 HKDC1Q2TB90 917 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 GGTA1PQ4G0N0 100 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 WASHC2DQ5SRD0 308 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 PRAMEF17Q5VTA0 474 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 CSNK1A1LQ8N752 337 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 CDYL2Q8N8U2 506 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 OR7G3Q8NG95 312 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 USP7Q93009 1102 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 THAP11Q96EK4 314 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 ZNF285Q96NJ3 590 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 KCNA7Q96RP8 456 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 PITHD1Q9GZP4 211 aaPredicted RBP20.24■□□□□ 0.83
VPS29-206ENST00000549578 NT5DC2Q9H857 520 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 ZNF395Q9H8N7 513 aaPredicted RBP20.24■□□□□ 0.83
VPS29-206ENST00000549578 INTS9Q9NV88 658 aaKnown RBP20.24■□□□□ 0.83
VPS29-206ENST00000549578 TRPS1Q9UHF7 1281 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 ZFP69BQ9UJL9 534 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 B3GALT1Q9Y5Z6 326 aa20.24■□□□□ 0.83
VPS29-206ENST00000549578 ITM2AO43736 263 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 LYPLA1O75608 230 aaPredicted RBP20.23■□□□□ 0.83
VPS29-206ENST00000549578 ESRRBO95718 433 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 SERPIND1P05546 499 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 AHRP35869 848 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 RAB15P59190 212 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 DCAF12Q5T6F0 453 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 PWWP2BQ6NUJ5 590 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 CYB5D1Q6P9G0 228 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 VN1R5Q7Z5H4 357 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 ASPGQ86U10 573 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 CUZD1Q86UP6 607 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 LAS2Q8IYD9 372 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 GPR135Q8IZ08 494 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 OR8K5Q8NH50 307 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 SLC13A3Q8WWT9 602 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 UBE2E3Q969T4 207 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 TAAR9Q96RI9 348 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 AP1M2Q9Y6Q5 423 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 CACNA1AO00555 2505 aa20.23■□□□□ 0.83
VPS29-206ENST00000549578 C9orf172C9J069 976 aa20.22■□□□□ 0.83
VPS29-206ENST00000549578 H0YIV9 168 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms