RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 EXD3Q8N9H8 876 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 EIF1ADQ8N9N8 165 aaKnown RBP8.79□□□□□ -1
SNHG1-215ENST00000540904 SNX31Q8N9S9 440 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 PDPRQ8NCN5 879 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 LSM14AQ8ND56 463 aaKnown RBP8.79□□□□□ -1
SNHG1-215ENST00000540904 ZNF740Q8NDX6 193 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 OR4K1Q8NGD4 311 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 SLC13A3Q8WWT9 602 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 THAP4Q8WY91 577 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 ESAMQ96AP7 390 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 FKBP10Q96AY3 582 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 THAP11Q96EK4 314 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 MMABQ96EY8 250 aaPredicted RBP8.79□□□□□ -1
SNHG1-215ENST00000540904 WBP1Q96G27 269 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 TMEM79Q9BSE2 394 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 DRC3Q9H069 523 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 CNOT10Q9H9A5 744 aaKnown RBP8.79□□□□□ -1
SNHG1-215ENST00000540904 ZNF304Q9HCX3 659 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 CTSFQ9UBX1 484 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 ZNF180Q9UJW8 692 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 PTBP2Q9UKA9 531 aaKnown RBP8.79□□□□□ -1
SNHG1-215ENST00000540904 CDC14AQ9UNH5 594 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 MAN2B2Q9Y2E5 1009 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 KCNMB2Q9Y691 235 aa8.79□□□□□ -1
SNHG1-215ENST00000540904 SNRNP200O75643 2136 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 LOC400499M0QZD8 3231 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 A0A0A6YYC8 382 aaPredicted RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 TRBC2A0A5B9 178 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SYCE1LA8MT33 242 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 TRIM49D1C9J1S8 452 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 I3L1I5 382 aaPredicted RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 FFAR3O14843 346 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 GPR42O15529 346 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 NDUFS4O43181 175 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 CCNT2O60583 730 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 CNOT3O75175 753 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 STK16O75716 305 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 IPO13O94829 963 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 KLHL2O95198 593 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SLU7O95391 586 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 ALBP02768 609 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 PRB1P04280 392 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SERPIND1P05546 499 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SNRPAP09012 282 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 SLC35G6P0C7Q6 338 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 GNAZP19086 355 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 FBLP22087 321 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 TNFRSF8P28908 595 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 GGT5P36269 586 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SLC6A12P48065 614 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 AGTR2P50052 363 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SNRPNP63162 240 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 REEP5Q00765 189 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 CDC16Q13042 620 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SSPNQ14714 243 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 ACAP2Q15057 778 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 RBBP5Q15291 538 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 PDK4Q16654 411 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 LGSNQ5TDP6 509 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 GARNL3Q5VVW2 1013 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SHISA6Q6ZSJ9 500 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 COX15Q7KZN9 410 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 TMEM151BQ8IW70 566 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 KLHDC8AQ8IYD2 350 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 PRSS58Q8IYP2 241 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 PLD6Q8N2A8 252 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 ARHGEF39Q8N4T4 335 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 MFSD9Q8NBP5 474 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 KCT2Q8NC54 265 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 CAMKVQ8NCB2 501 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 OR2Y1Q8NGV0 311 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 ADAMTS17Q8TE56 1095 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 UBLCP1Q8WVY7 318 aaPredicted RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 MVB12AQ96EY5 273 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 ATOH8Q96SQ7 321 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 AIF1LQ9BQI0 150 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 YIPF2Q9BWQ6 316 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SEMA4CQ9C0C4 833 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SPNS1Q9H2V7 528 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SOX17Q9H6I2 414 aaPredicted RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 ANKZF1Q9H8Y5 726 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 DNAJC11Q9NVH1 559 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 NUDT4Q9NZJ9 180 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 TRPC4Q9UBN4 977 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 MRPS2Q9Y399 296 aaKnown RBP8.78□□□□□ -1
SNHG1-215ENST00000540904 MGAQ8IWI9 3026 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 NBEAQ8NFP9 2946 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 SPTBP11277 2137 aa8.78□□□□□ -1
SNHG1-215ENST00000540904 ARGFXA6NJG6 315 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 TK2O00142 265 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 CLGNO14967 610 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 PRPF4O43172 522 aaKnown RBP eCLIP8.77□□□□□ -1.01
SNHG1-215ENST00000540904 FOXS1O43638 330 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 H2AFYO75367 372 aaKnown RBP8.77□□□□□ -1.01
SNHG1-215ENST00000540904 ONECUT2O95948 504 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 UMODP07911 640 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 C1GALT1C1LP0DN25 315 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 MTHFD2P13995 350 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 GFAPP14136 432 aa8.77□□□□□ -1.01
SNHG1-215ENST00000540904 IL1RNP18510 177 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms