RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 B4GAT1O43505 415 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 NUDT21O43809 227 aaKnown RBP11.52□□□□□ -0.57
CLIP1-208ENST00000537004 XRCC1P18887 633 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-208ENST00000537004 ME2P23368 584 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 HMOX2P30519 316 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 VHLP40337 213 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 CDKL1Q00532 357 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 SP140Q13342 867 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 RTP5Q14D33 572 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 ATP6AP1LQ52LC2 224 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 C3orf38Q5JPI3 329 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 C6orf136Q5SQH8 315 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 HACD2Q6Y1H2 254 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 Q6ZSR9 355 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 NEK10Q6ZWH5 1172 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 USP53Q70EK8 1073 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 SPRED1Q7Z699 444 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 ZNF547Q8IVP9 402 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 RNF148Q8N7C7 305 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 RASGEF1AQ8N9B8 481 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 NXPE2Q96DL1 559 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 HBEGFQ99075 208 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 C1orf50Q9BV19 199 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 NRSN2Q9GZP1 204 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 LRRN3Q9H3W5 708 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 S100A14Q9HCY8 104 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 ADA2Q9NZK5 511 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 SATB2Q9UPW6 733 aa11.52□□□□□ -0.57
CLIP1-208ENST00000537004 PABPN1LA6NDY0 278 aaKnown RBP11.51□□□□□ -0.57
CLIP1-208ENST00000537004 D6RAR5 112 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 E7ENX8 843 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 GFYI3L273 518 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 SLC16A5O15375 505 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 TLX3O43711 291 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-208ENST00000537004 SLCO2B1O94956 709 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 HIST1H2AGP0C0S8 130 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-208ENST00000537004 HIST1H2ADP20671 130 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 CAPN3P20807 821 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 MSX2P35548 267 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-208ENST00000537004 GGT5P36269 586 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 PIK3CGP48736 1102 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 MRPL19P49406 292 aaKnown RBP11.51□□□□□ -0.57
CLIP1-208ENST00000537004 CTSCP53634 463 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 CLNS1AP54105 237 aaKnown RBP11.51□□□□□ -0.57
CLIP1-208ENST00000537004 GABREP78334 506 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 ABRAXAS2Q15018 415 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 NKAIN2Q5VXU1 208 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 RETREG3Q86VR2 466 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 CACTIN-AS1Q8N1I8 211 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 TCAIMQ8N3R3 496 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 FNDC5Q8NAU1 212 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 PCYOX1LQ8NBM8 494 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 SLC37A2Q8TED4 501 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 ROPN1LQ96C74 230 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 HIST1H2AHQ96KK5 128 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 ANKRD27Q96NW4 1050 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 GFM1Q96RP9 751 aaKnown RBP11.51□□□□□ -0.57
CLIP1-208ENST00000537004 HIST1H2AJQ99878 128 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 H2AFJQ9BTM1 129 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 NTMT1Q9BV86 223 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 BRINP2Q9C0B6 783 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 OSGEPL1Q9H4B0 414 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 PRDM8Q9NQV8 689 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 FAM8A1Q9UBU6 413 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 KIF26BQ2KJY2 2108 aa11.51□□□□□ -0.57
CLIP1-208ENST00000537004 RHPN2P1A8MT19 583 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 C9JVG2 144 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 FFAR3O14843 346 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 GPR42O15529 346 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 CYP2A7P20853 494 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 PRLHRP49683 370 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 TMEM115Q12893 351 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 FLOT2Q14254 428 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 C11orf91Q3C1V1 193 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 VPS26BQ4G0F5 336 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 SYTL3Q4VX76 610 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 TTC23LQ6PF05 361 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 BLOC1S3Q6QNY0 202 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 SFRP1Q8N474 314 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 OR6C4Q8NGE1 309 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 RSRC1Q96IZ7 334 aaKnown RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 SLC45A3Q96JT2 553 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 DCBLD2Q96PD2 775 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 SPAG4Q9NPE6 437 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 NMRK1Q9NWW6 199 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 SCHIP1Q9P0W5 487 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 DKK4Q9UBT3 224 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 CROTQ9UKG9 612 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 NDUFAF1Q9Y375 327 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 RNF11Q9Y3C5 154 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 LRRC42Q9Y546 428 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 KALRNO60229 2985 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 LSM1O15116 133 aaKnown RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 ANGPT2O15123 496 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 NVLO15381 856 aaKnown RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 BAG2O95816 211 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 EBLN1P0CF75 366 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 PAX7P23759 505 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 RPL10P27635 214 aaKnown RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 HNMTP50135 292 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms