RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NQO1P15559 274 aaKnown RBP20.16■□□□□ 0.82
VPS28-208ENST00000527797 HOXD12P35452 270 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 GRIA3P42263 894 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 POLR2JP52435 117 aaKnown RBP20.16■□□□□ 0.82
VPS28-208ENST00000527797 KCNJ2P63252 427 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 TBL3Q12788 808 aaKnown RBP20.16■□□□□ 0.82
VPS28-208ENST00000527797 ANGPT1Q15389 498 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 DUOXA1Q1HG43 343 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 C14orf28Q4W4Y0 310 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 KLHL35Q6PF15 583 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 PLD3Q8IV08 490 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 ZBTB44Q8NCP5 570 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 GPR156Q8NFN8 814 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 TEX37Q96LM6 180 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 ZBTB18Q99592 522 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 DPY30Q9C005 99 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 DLGAP4Q9Y2H0 992 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 PCDHGA2Q9Y5H1 932 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 BBIP1A8MTZ0 92 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 HAT1O14929 419 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 ZW10O43264 779 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 LCMT2O60294 686 aaKnown RBP20.15■□□□□ 0.82
VPS28-208ENST00000527797 JAK1P23458 1154 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 GSTM2P28161 218 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 CPOXP36551 454 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 NUDT2P50583 147 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 CYP4F2P78329 520 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 SLC25A3Q00325 362 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 ART3Q13508 389 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 PTGR1Q14914 329 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 SHBQ15464 509 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 SLC5A12Q1EHB4 618 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 SPESP1Q6UW49 350 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 SLC25A45Q8N413 288 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 C1orf52Q8N6N3 182 aaKnown RBP20.15■□□□□ 0.82
VPS28-208ENST00000527797 KYQ8NBH2 561 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 CEP76Q8TAP6 659 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 RAB3IPQ96QF0 476 aaPredicted RBP20.15■□□□□ 0.82
VPS28-208ENST00000527797 SLC38A3Q99624 504 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 SARGQ9BW04 601 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 ACTL8Q9H568 366 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 ANKMY1Q9P2S6 941 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 BAIAP2L1Q9UHR4 511 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 KLHL20Q9Y2M5 609 aa20.15■□□□□ 0.82
VPS28-208ENST00000527797 SPAG17Q6Q759 2223 aa20.14■□□□□ 0.82
VPS28-208ENST00000527797 LILRA5A6NI73 299 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 C9JVG2 144 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 GSC2O15499 205 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 TNFSF14O43557 240 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 NRP2O60462 931 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 CFIP05156 583 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 KRT16P08779 473 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 SDC1P18827 310 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 IL12AP29459 219 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 BCL6P41182 706 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 VPS26BQ4G0F5 336 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 C6orf132Q5T0Z8 1188 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 PRR23BQ6ZRT6 265 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 TRIM73Q86UV7 250 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 PAQR7Q86WK9 346 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 MCUR1Q96AQ8 359 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 C11orf24Q96F05 449 aaPredicted RBP20.14■□□□□ 0.81
VPS28-208ENST00000527797 SLC45A3Q96JT2 553 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 NPAS2Q99743 824 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 CADM1Q9BY67 442 aaKnown RBP20.14■□□□□ 0.81
VPS28-208ENST00000527797 SIRT5Q9NXA8 310 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 AHSPQ9NZD4 102 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 NDUFAF1Q9Y375 327 aa20.14■□□□□ 0.81
VPS28-208ENST00000527797 DYTNA2CJ06 578 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 FBP2O00757 339 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 CLEC3AO75596 197 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 UBXN7O94888 489 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 TYRP1P17643 537 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 AHRP35869 848 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 ZFP36L2P47974 494 aaKnown RBP20.13■□□□□ 0.81
VPS28-208ENST00000527797 CLDN8P56748 225 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 RCAN2Q14206 197 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 DEPDC1Q5TB30 811 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 KHDRBS2Q5VWX1 349 aaKnown RBP20.13■□□□□ 0.81
VPS28-208ENST00000527797 REP15Q6BDI9 236 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 METTL4Q8N3J2 472 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 MFSD9Q8NBP5 474 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 GLB1L3Q8NCI6 653 aaPredicted RBP20.13■□□□□ 0.81
VPS28-208ENST00000527797 SPDL1Q96EA4 605 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 EBPLQ9BY08 206 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 MS4A8Q9BY19 250 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 NDE1Q9NXR1 346 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 A0A1B0GTQ1 180 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 CCDC154A6NI56 674 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 RHPN2P1A8MT19 583 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 SAP18O00422 153 aaKnown RBP20.13■□□□□ 0.81
VPS28-208ENST00000527797 MRASO14807 208 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 ANGPT2O15123 496 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 DFNA5O60443 496 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 ITGAXP20702 1163 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 CAPN3P20807 821 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 MAGP20916 626 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 HLA-BQ31612 363 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 FIGLAQ6QHK4 219 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 C16orf89Q6UX73 402 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms