RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 A0A1W2PQ72 361 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 NPEPPSL1A6NEC2 478 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 CXorf49A8MYA2 514 aaPredicted RBP19.58■□□□□ 0.72
VPS28-206ENST00000526734 I3L1I5 382 aaPredicted RBP19.58■□□□□ 0.72
VPS28-206ENST00000526734 CDC7O00311 574 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 MAP2K7O14733 419 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 ACPPP15309 386 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 VARSP26640 1264 aaKnown RBP19.58■□□□□ 0.72
VPS28-206ENST00000526734 BCL6P41182 706 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 PGGT1BP53609 377 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 FOXL2P58012 376 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 ATP6V0D1P61421 351 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 SKP1P63208 163 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 FOXK1P85037 733 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 ZNF460Q14592 562 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 CDKL4Q5MAI5 379 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 TMEM214Q6NUQ4 689 aaKnown RBP19.58■□□□□ 0.72
VPS28-206ENST00000526734 SHISA6Q6ZSJ9 500 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 CTAGE3PQ8IX95 158 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 TCAIMQ8N3R3 496 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 DTWD1Q8N5C7 304 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 SLC13A3Q8WWT9 602 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 SLC5A11Q8WWX8 675 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 PYCR2Q96C36 320 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 EGFL8Q99944 293 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 TSPYL1Q9H0U9 437 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 PELI2Q9HAT8 420 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 SH2B3Q9UQQ2 575 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 MTO1Q9Y2Z2 717 aaKnown RBP19.58■□□□□ 0.72
VPS28-206ENST00000526734 SLC22A7Q9Y694 548 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 KCNE2Q9Y6J6 123 aa19.58■□□□□ 0.72
VPS28-206ENST00000526734 WISP3O95389 354 aaPredicted RBP19.57■□□□□ 0.72
VPS28-206ENST00000526734 HPP00738 406 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 C1QAP02745 245 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 CXCR2P25025 360 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 EMP2P54851 167 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 PWP1Q13610 501 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 TSNQ15631 228 aaKnown RBP19.57■□□□□ 0.72
VPS28-206ENST00000526734 ZKSCAN8Q15776 578 aaPredicted RBP19.57■□□□□ 0.72
VPS28-206ENST00000526734 ZXDCQ2QGD7 858 aaPredicted RBP19.57■□□□□ 0.72
VPS28-206ENST00000526734 IGFL3Q6UXB1 125 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 KLHDC8AQ8IYD2 350 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 OR11G2Q8NGC1 345 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 ANKRD49Q8WVL7 239 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 OR4K3Q96R72 315 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 YIPF2Q9BWQ6 316 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 ANKHQ9HCJ1 492 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 LRRC4CQ9HCJ2 640 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 IKZF3Q9UKT9 509 aa19.57■□□□□ 0.72
VPS28-206ENST00000526734 PCSK5Q92824 1860 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 IDSB3KWA1 339 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 ITGA3P26006 1051 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 AHRP35869 848 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 KBTBD12Q3ZCT8 623 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 VWA2Q5GFL6 755 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 THOC6Q86W42 341 aaKnown RBP19.56■□□□□ 0.72
VPS28-206ENST00000526734 MMGT1Q8N4V1 131 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 NEIL2Q969S2 332 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 PNPLA2Q96AD5 504 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 AIF1LQ9BQI0 150 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 LRRC1Q9BTT6 524 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 CAPS2Q9BXY5 557 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 ZNF552Q9H707 407 aaPredicted RBP19.56■□□□□ 0.72
VPS28-206ENST00000526734 MTRF1LQ9UGC7 380 aaKnown RBP19.56■□□□□ 0.72
VPS28-206ENST00000526734 ANKRD12Q6UB98 2062 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 MED13Q9UHV7 2174 aa19.56■□□□□ 0.72
VPS28-206ENST00000526734 FEZF1A0PJY2 475 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 SORBS2O94875 1100 aaKnown RBP19.55■□□□□ 0.72
VPS28-206ENST00000526734 HEXBP07686 556 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 IL10P22301 178 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 RAB10P61026 200 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 AP2B1P63010 937 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 REEP5Q00765 189 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 GUCY2DQ02846 1103 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 RGS1Q08116 209 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 HERC3Q15034 1050 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 ATG9BQ674R7 924 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 JMJD6Q6NYC1 403 aaPredicted RBP19.55■□□□□ 0.72
VPS28-206ENST00000526734 CCDC91Q7Z6B0 441 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 ATCAYQ86WG3 371 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 TMEM151BQ8IW70 566 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 ZC3H7AQ8IWR0 971 aaKnown RBP19.55■□□□□ 0.72
VPS28-206ENST00000526734 PRSS58Q8IYP2 241 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 PPM1NQ8N819 430 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 OR9A4Q8NGU2 314 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 FBF1Q8TES7 1133 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 LHPPQ9H008 270 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 CNOT10Q9H9A5 744 aaKnown RBP19.55■□□□□ 0.72
VPS28-206ENST00000526734 CAB39LQ9H9S4 337 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 ZDHHC18Q9NUE0 388 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 RIC8BQ9NVN3 520 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 ZFP69BQ9UJL9 534 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 BSNQ9UPA5 3926 aa19.55■□□□□ 0.72
VPS28-206ENST00000526734 URADA6NGE7 173 aa19.54■□□□□ 0.72
VPS28-206ENST00000526734 TTLL8A6PVC2 850 aa19.54■□□□□ 0.72
VPS28-206ENST00000526734 OR1F1O43749 312 aa19.54■□□□□ 0.72
VPS28-206ENST00000526734 LCMT2O60294 686 aaKnown RBP19.54■□□□□ 0.72
VPS28-206ENST00000526734 PIAS1O75925 651 aa19.54■□□□□ 0.72
VPS28-206ENST00000526734 CCDC166P0CW27 439 aa19.54■□□□□ 0.72
VPS28-206ENST00000526734 GNAZP19086 355 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms