RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 NTMT1Q9BV86 223 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 MANSC1Q9H8J5 431 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 SIDT1Q9NXL6 827 aaKnown RBP13.13□□□□□ -0.31
CD44-224ENST00000526669 PISDQ9UG56 409 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 PILRAQ9UKJ1 303 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 SATB2Q9UPW6 733 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 TIMM22Q9Y584 194 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 KLK4Q9Y5K2 254 aa13.13□□□□□ -0.31
CD44-224ENST00000526669 NUP210LQ5VU65 1888 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 KCNE1BA0A087WTH5 132 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 TMEM233B4DJY2 109 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 H0YGG7 62 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 TMX2-CTNND1H3BSU7 103 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 CRCPO75575 148 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 CAPN1P07384 714 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 ATXN8OSP0DMR3 200 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 EZRP15311 586 aaKnown RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 SPINK2P20155 84 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 CXCR2P25025 360 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 SERPINB3P29508 390 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 HMOX2P30519 316 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 HNF4AP41235 474 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 CASP2P42575 452 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 SCTRP47872 440 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 HTR6P50406 440 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 FOXA1P55317 472 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 PKNOX1P55347 436 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 ARF3P61204 181 aaPredicted RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 RPS15AP62244 130 aaKnown RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 LAPTM5Q13571 262 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 ZRSR2Q15696 482 aaKnown RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 TBCCQ15814 346 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 HIST2H2ACQ16777 129 aaPredicted RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 SGO1Q5FBB7 561 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 PAGE2BQ5JRK9 111 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 LIPJQ5W064 366 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 TTC19Q6DKK2 380 aaPredicted RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 CLEC6AQ6EIG7 209 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 HIST2H2AA3Q6FI13 130 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 SCIMPQ6UWF3 145 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 TMIGD1Q6UXZ0 262 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 TMPRSS7Q7RTY8 843 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 TRIM42Q8IWZ5 723 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 GALNT15Q8N3T1 639 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 L3MBTL4Q8NA19 623 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 MFSD9Q8NBP5 474 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 OR1L3Q8NH93 324 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 ZNF75CPQ92670 426 aaPredicted RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 WDR34Q96EX3 536 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 CMKLR1Q99788 373 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 C20orf27Q9GZN8 174 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 SPRTNQ9H040 489 aaPredicted RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 EHD1Q9H4M9 534 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 FGF21Q9NSA1 209 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 AKAP7Q9P0M2 348 aaPredicted RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 TRPS1Q9UHF7 1281 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 ZNF490Q9ULM2 529 aaPredicted RBP13.12□□□□□ -0.31
CD44-224ENST00000526669 PLCL2Q9UPR0 1127 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 PCDHGA4Q9Y5G9 962 aa13.12□□□□□ -0.31
CD44-224ENST00000526669 AKAP13Q12802 2813 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 TMEM114B3SHH9 223 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 JMJD7P0C870 316 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 GYS2P54840 703 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 NAA20P61599 178 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 GUCY1A3Q02108 690 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 ACY1Q03154 408 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 HKDC1Q2TB90 917 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 ZC3H12BQ5HYM0 836 aaKnown RBP13.11□□□□□ -0.31
CD44-224ENST00000526669 SH2D4BQ5SQS7 431 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 PRAMEF17Q5VTA0 474 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 ATG16L1Q676U5 607 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 MED27Q6P2C8 311 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 VN1R5Q7Z5H4 357 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 VN1R4Q7Z5H5 301 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 TBC1D19Q8N5T2 526 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 BMPERQ8N8U9 685 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 WDR36Q8NI36 951 aaKnown RBP13.11□□□□□ -0.31
CD44-224ENST00000526669 METTL6Q8TCB7 284 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 LRRC8CQ8TDW0 803 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 CKAP2Q8WWK9 683 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 RERGQ96A58 199 aaPredicted RBP13.11□□□□□ -0.31
CD44-224ENST00000526669 GRAMD1AQ96CP6 724 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 ZNF501Q96CX3 271 aaPredicted RBP13.11□□□□□ -0.31
CD44-224ENST00000526669 OR2A5Q96R48 311 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 HBEGFQ99075 208 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 SORT1Q99523 831 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 FANCEQ9HB96 536 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 FARSBQ9NSD9 589 aaKnown RBP13.11□□□□□ -0.31
CD44-224ENST00000526669 SLC39A1Q9NY26 324 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 ZDHHC2Q9UIJ5 367 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 KLK13Q9UKR3 277 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 STK38LQ9Y2H1 464 aa13.11□□□□□ -0.31
CD44-224ENST00000526669 ANKDD1BA6NHY2 528 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 PLD2O14939 933 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 NDUFS4O43181 175 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 UGDHO60701 494 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 ESRRBO95718 433 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 GRK2P25098 689 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 NEK2P51955 445 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 ITGA1P56199 1179 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms