RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 XKR6Q5GH73 641 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 TCHHL1Q5QJ38 904 aaPredicted RBP14.67□□□□□ -0.06
LSM1-203ENST00000520755 ADNP2Q6IQ32 1131 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 GRHL2Q6ISB3 625 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 GPRIN3Q6ZVF9 776 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 ZNF781Q8N8C0 355 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 USP7Q93009 1102 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 PRAP1Q96NZ9 151 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 TAAR9Q96RI9 348 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 PLCD4Q9BRC7 762 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 EHD1Q9H4M9 534 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 ACTR8Q9H981 624 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 TRPS1Q9UHF7 1281 aa14.67□□□□□ -0.06
LSM1-203ENST00000520755 POLR1CO15160 346 aaPredicted RBP14.66□□□□□ -0.06
LSM1-203ENST00000520755 HCRTR1O43613 425 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 UGDHO60701 494 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 CTSVO60911 334 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 ESRRBO95718 433 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 HSPA4LO95757 839 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 HTR6P50406 440 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 RAB15P59190 212 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 NAA25Q14CX7 972 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 ATG16L1Q676U5 607 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 PLD3Q8IV08 490 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 N4BP2L2Q92802 583 aaPredicted RBP14.66□□□□□ -0.06
LSM1-203ENST00000520755 ZUFSPQ96AP4 578 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 RNF31Q96EP0 1072 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 PTCD3Q96EY7 689 aaKnown RBP14.66□□□□□ -0.06
LSM1-203ENST00000520755 SLC46A1Q96NT5 459 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 CAPS2Q9BXY5 557 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 FANCEQ9HB96 536 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 FBXO8Q9NRD0 319 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 FGF21Q9NSA1 209 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 TMEM184CQ9NVA4 438 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 THAP1Q9NVV9 213 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 ANKMY1Q9P2S6 941 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 ZDHHC2Q9UIJ5 367 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 RARRES3Q9UL19 164 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 SNX7Q9UNH6 387 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 STK38LQ9Y2H1 464 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 SPTBP11277 2137 aa14.66□□□□□ -0.06
LSM1-203ENST00000520755 AKAP13Q12802 2813 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 FEZF1A0PJY2 475 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 TCP11X1B4DZS4 312 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 TMEM150CB9EJG8 249 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 C9orf172C9J069 976 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CLDN9O95484 217 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CAPN1P07384 714 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 BCL6P41182 706 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 GABRA4P48169 554 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CCR8P51685 355 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CYP4F3Q08477 520 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 SH2D4BQ5SQS7 431 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 DCAF12Q5T6F0 453 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 TMEM164Q5U3C3 297 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 LIPJQ5W064 366 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 KANK2Q63ZY3 851 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CLEC6AQ6EIG7 209 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CYB5D1Q6P9G0 228 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CEACAM20Q6UY09 585 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 FAM47EQ6ZV65 393 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 RNF44Q7L0R7 432 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 VN1R5Q7Z5H4 357 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 MILR1Q7Z6M3 343 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 DNAJC22Q8N4W6 341 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CDYL2Q8N8U2 506 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 ANKRD53Q8N9V6 530 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 AGR3Q8TD06 166 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 GATA6Q92908 595 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 ATP6V1E2Q96A05 226 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 C7orf26Q96N11 449 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 FCRL4Q96PJ5 515 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 ZNF317Q96PQ6 595 aaPredicted RBP14.65□□□□□ -0.06
LSM1-203ENST00000520755 EFCAB11Q9BUY7 163 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 SARGQ9BW04 601 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 CHRNA10Q9GZZ6 450 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 ASCL3Q9NQ33 180 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 PNPOQ9NVS9 261 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 PILRAQ9UKJ1 303 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 ZNF490Q9ULM2 529 aaPredicted RBP14.65□□□□□ -0.06
LSM1-203ENST00000520755 RAP2CQ9Y3L5 183 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 TIMM22Q9Y584 194 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 B3GALT1Q9Y5Z6 326 aa14.65□□□□□ -0.06
LSM1-203ENST00000520755 A0A0J9YVX5 310 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 FFAR3O14843 346 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 GPR42O15529 346 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 LCMT2O60294 686 aaKnown RBP14.64□□□□□ -0.07
LSM1-203ENST00000520755 EDF1O60869 148 aaKnown RBP14.64□□□□□ -0.07
LSM1-203ENST00000520755 JUNP05412 331 aaKnown RBP14.64□□□□□ -0.07
LSM1-203ENST00000520755 ENO1P06733 434 aaKnown RBP14.64□□□□□ -0.07
LSM1-203ENST00000520755 FGF5P12034 268 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 SLC5A2P31639 672 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 ARL1P40616 181 aaPredicted RBP14.64□□□□□ -0.07
LSM1-203ENST00000520755 HNF4AP41235 474 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 IL11RAQ14626 422 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 ZRSR2Q15696 482 aaKnown RBP14.64□□□□□ -0.07
LSM1-203ENST00000520755 CPSF6Q16630 551 aaKnown RBP eCLIP14.64□□□□□ -0.07
LSM1-203ENST00000520755 UGT3A2Q3SY77 523 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 CGB2Q6NT52 195 aa14.64□□□□□ -0.07
LSM1-203ENST00000520755 PPP1R3BQ86XI6 285 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms