RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 C1GALT1C1LP0DN25 315 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 OR1E2P47887 323 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 CSRP3P50461 194 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 PNLIPRP1P54315 467 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 DCTN2Q13561 401 aaKnown RBP9.81□□□□□ -0.84
MCF2-209ENST00000520602 KCNC3Q14003 757 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 DEF8Q6ZN54 512 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 DPPA4Q7L190 304 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 DPP10Q8N608 796 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 TFAP2CQ92754 450 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 CXorf40BQ96DE9 158 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 RAD21L1Q9H4I0 556 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 EQTNQ9NQ60 294 aa9.81□□□□□ -0.84
MCF2-209ENST00000520602 KIAA0355O15063 1070 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 MID1O15344 667 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 B4GAT1O43505 415 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 SLC28A2O43868 658 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 AMD1P17707 334 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 KDELR2P33947 212 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 VMACQ2NL98 169 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 FAM78AQ5JUQ0 283 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ZNF614Q8N883 585 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 PIK3C3Q8NEB9 887 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 OR5AR1Q8NGP9 310 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 NXPE3Q969Y0 559 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 CLMPQ9H6B4 373 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ATXN10Q9UBB4 475 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ZNF282Q9UDV7 671 aaPredicted RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 ENTPD4Q9Y227 616 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ZSWIM8A7E2V4 1837 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 MYO16Q9Y6X6 1858 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 K7ESM1 405 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 FADS2O95864 444 aaKnown RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 CCNA2P20248 432 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 IGFBP4P22692 258 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 CDKN2CP42773 168 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ZNF763Q0D2J5 394 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 GANABQ14697 944 aaKnown RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 RUNDC3AQ59EK9 446 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 DLEU7Q6UYE1 221 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ZNF605Q86T29 641 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 CYP4Z1Q86W10 505 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 CHCHD4Q8N4Q1 142 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 FAM86B1Q8N7N1 296 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 FRS2Q8WU20 508 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ZNF480Q8WV37 535 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 GTPBP3Q969Y2 492 aaKnown RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 DTD2Q96FN9 168 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 MCCC1Q96RQ3 725 aaPredicted RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 NODALQ96S42 347 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 FBXW2Q9UKT8 454 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 DOLKQ9UPQ8 538 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 ZNF451Q9Y4E5 1061 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 TRBV5-4A0A0C4DH59 114 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 LOC100130705A0A1B0GUX0 176 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 WISP3O95389 354 aaPredicted RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 HNRNPCP07910 306 aaKnown RBP eCLIP9.8□□□□□ -0.84
MCF2-209ENST00000520602 NTSP30990 170 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 TIA1P31483 386 aaKnown RBP eCLIP9.8□□□□□ -0.84
MCF2-209ENST00000520602 SERPINB10P48595 397 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 MC1RQ01726 317 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 RUNX3Q13761 415 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 AHSA2Q719I0 299 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 TRIM46Q7Z4K8 759 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 SPRED2Q7Z698 418 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 TMCO5AQ8N6Q1 288 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 TERB1Q8NA31 727 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 GOLM1Q8NBJ4 401 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 FAM81AQ8TBF8 368 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 CEP19Q96LK0 163 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 VPS35Q96QK1 796 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 LYSMD1Q96S90 227 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 TRMT61BQ9BVS5 477 aaKnown RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 CHCHD3Q9NX63 227 aaKnown RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 MBD1Q9UIS9 605 aaPredicted RBP9.8□□□□□ -0.84
MCF2-209ENST00000520602 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.8□□□□□ -0.84
MCF2-209ENST00000520602 MIA3Q5JRA6 1907 aa9.8□□□□□ -0.84
MCF2-209ENST00000520602 GSAPA4D1B5 854 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 GLOD5A6NK44 160 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 PRRT4C9JH25 899 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 H0YJX3 145 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 GAPDHSO14556 408 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 HRH2P25021 359 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 PTX3P26022 381 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 ST13P50502 369 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 METAP1P53582 386 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 YBX1P67809 324 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 TOP3AQ13472 1001 aaPredicted RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 TMEM240Q5SV17 173 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 DUS1LQ6P1R4 473 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 FAM129CQ86XR2 697 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ZCCHC7Q8N3Z6 543 aaKnown RBP9.79□□□□□ -0.84
MCF2-209ENST00000520602 TMEM145Q8NBT3 493 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 DDHD1Q8NEL9 900 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 NFKBIDQ8NI38 313 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 DTNBP1Q96EV8 351 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 F2RL3Q96RI0 385 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 YIPF4Q9BSR8 244 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 CFHR5Q9BXR6 569 aa9.79□□□□□ -0.84
MCF2-209ENST00000520602 ANKRD60Q9BZ19 345 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms