RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TMEM9Q9P0T7 183 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 MSRAQ9UJ68 235 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 SPO11Q9Y5K1 396 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 IRAK3Q9Y616 596 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 DOT1LQ8TEK3 1739 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 FAM172BPA6NC97 362 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 AOC2O75106 756 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 STC2O76061 302 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 FDXRP22570 491 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 MNDAP41218 407 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 STXBP1P61764 594 aaKnown RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 GHRHRQ02643 423 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 MOGQ16653 247 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ZNF311Q5JNZ3 666 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ATAT1Q5SQI0 421 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 LCN1P1Q5VSP4 162 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 DPY19L2P1Q6NXN4 242 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 SCD5Q86SK9 330 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 OAFQ86UD1 273 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 C3orf58Q8NDZ4 430 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 R3HDMLQ9H3Y0 253 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 CALML5Q9NZT1 146 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 IL36AQ9UHA7 158 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ZNF840PA6NDX5 716 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 NPPAP01160 153 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 C8orf89P0DMQ9 161 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 TFPIP10646 304 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 MVKQ03426 396 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 E2F2Q14209 437 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 TLDC1Q6P9B6 456 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 SLC22A16Q86VW1 577 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 RNF130Q86XS8 419 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 UFD1Q92890 307 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 PEX13Q92968 403 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ZNF354BQ96LW1 612 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ALPK1Q96QP1 1244 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ITPAQ9BY32 194 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 PCBD2Q9H0N5 130 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 WDR26Q9H7D7 661 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 CARS2Q9HA77 564 aaKnown RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 COMMD9Q9P000 198 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 KCNK6Q9Y257 313 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 MAN2B2Q9Y2E5 1009 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 CAPN14A8MX76 684 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 PDYNP01213 254 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 CBSLP0DN79 551 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 HTR1EP28566 365 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 KDELR2P33947 212 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 CBSP35520 551 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 FOXA1P55317 472 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 LASP1Q14847 261 aaKnown RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 RANBP3LQ86VV4 465 aaPredicted RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 GPR135Q8IZ08 494 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ATP6V1C2Q8NEY4 427 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 OR6K6Q8NGW6 343 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 SLC22A17Q8WUG5 538 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 KLHL6Q8WZ60 621 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 PIK3R3Q92569 461 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 TMCO6Q96DC7 493 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 BARD1Q99728 777 aaKnown RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 DPH2Q9BQC3 489 aaPredicted RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 BOCQ9BWV1 1114 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ARHGAP39Q9C0H5 1083 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 RACGAP1Q9H0H5 632 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 AKAP11Q9UKA4 1901 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 TSPAN6O43657 245 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ALPPP05187 535 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 ETV3P41162 512 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 MAP2K4P45985 399 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 IDNKQ5T6J7 187 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 TRPV1Q8NER1 839 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 FUBP1Q96AE4 644 aaKnown RBP12.29□□□□□ -0.44
USP53-209ENST00000514665 TMIGD2Q96BF3 282 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 TM9SF3Q9HD45 589 aa12.29□□□□□ -0.44
USP53-209ENST00000514665 DAPL1A0PJW8 107 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 CAPN15O75808 1086 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 RB1P06400 928 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 MPIP34949 423 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 KHKP50053 298 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 TMEM115Q12893 351 aaPredicted RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 ZNF404Q494X3 552 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 GTDC1Q4AE62 458 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 KLHL22Q53GT1 634 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 GJD3Q8N144 294 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 TCEANCQ8N8B7 351 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 RGMAQ96B86 450 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 IL1RAPQ9NPH3 570 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 IGSF5Q9NSI5 407 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 TAF1P21675 1872 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 A0A0J9YVX5 310 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 A0A1W2PQ45 241 aaPredicted RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 A0A1W2PQY0 241 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 CNMDO75829 334 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 MAGEA6P43360 314 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 RORCP51449 518 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 ERVPABLB-1P60509 514 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 TEAD2Q15562 447 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 VMACQ2NL98 169 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 SLC30A6Q6NXT4 461 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms