RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 TMEM126BQ8IUX1 230 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 GPR135Q8IZ08 494 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 KRT78Q8N1N4 520 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CSNK1A1LQ8N752 337 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 MFSD9Q8NBP5 474 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 OR4F6Q8NGB9 312 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CCT6BQ92526 530 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 WDR34Q96EX3 536 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 OR2A5Q96R48 311 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 TAAR9Q96RI9 348 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CHRNA10Q9GZZ6 450 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 EHD1Q9H4M9 534 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 MID1IP1Q9NPA3 183 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 FBXO8Q9NRD0 319 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 PLSCR2Q9NRY7 297 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 SERTAD3Q9UJW9 196 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 NEUROG3Q9Y4Z2 214 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 PCDHGA4Q9Y5G9 962 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 PTPRBP23467 1997 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 MED19A0JLT2 244 aaPredicted RBP11.37□□□□□ -0.59
CUX1-210ENST00000497815 H3BQF6 201 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 UBFD1O14562 309 aaKnown RBP11.37□□□□□ -0.59
CUX1-210ENST00000497815 FFAR3O14843 346 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 GPR42O15529 346 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 P2RX6O15547 441 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 NDUFS4O43181 175 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 SCRG1O75711 98 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 WFS1O76024 890 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 MLYCDO95822 493 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 FGF5P12034 268 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 CHN1P15882 459 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 NR1D1P20393 614 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 HNF4AP41235 474 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 CASP2P42575 452 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 SCTRP47872 440 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 RAB15P59190 212 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 RELAQ04206 551 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 DDX39BQ13838 428 aaKnown RBP11.37□□□□□ -0.59
CUX1-210ENST00000497815 ZRSR2Q15696 482 aaKnown RBP11.37□□□□□ -0.59
CUX1-210ENST00000497815 HKDC1Q2TB90 917 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 SGO1Q5FBB7 561 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 TMEM164Q5U3C3 297 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 LIPJQ5W064 366 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 TTC19Q6DKK2 380 aaPredicted RBP11.37□□□□□ -0.59
CUX1-210ENST00000497815 PWWP2BQ6NUJ5 590 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 LETMD1Q6P1Q0 360 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 MED27Q6P2C8 311 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 CEACAM20Q6UY09 585 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 GPRIN3Q6ZVF9 776 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 VN1R4Q7Z5H5 301 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 ASPGQ86U10 573 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.37□□□□□ -0.596e-7■■■■■ 139.2
CUX1-210ENST00000497815 ZNF655Q8N720 491 aaPredicted RBP11.37□□□□□ -0.59
CUX1-210ENST00000497815 ANKRD53Q8N9V6 530 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 SLC13A3Q8WWT9 602 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 ZNF382Q96SR6 550 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 NTMT1Q9BV86 223 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 SLC7A5P2Q9GIP4 190 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 NRSN2Q9GZP1 204 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 DRC3Q9H069 523 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 MED4Q9NPJ6 270 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 FOXJ2Q9P0K8 574 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 METRNQ9UJH8 293 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 ZNF490Q9ULM2 529 aaPredicted RBP11.37□□□□□ -0.59
CUX1-210ENST00000497815 PCDHGA8Q9Y5G5 932 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 B3GALT1Q9Y5Z6 326 aa11.37□□□□□ -0.59
CUX1-210ENST00000497815 DCHS1Q96JQ0 3298 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 KCNE1BA0A087WTH5 132 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ANKDD1BA6NHY2 528 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 C9orf172C9J069 976 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ZSCAN9O15535 394 aaPredicted RBP11.36□□□□□ -0.59
CUX1-210ENST00000497815 ZNF749O43361 778 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 BRINP1O60477 761 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 NPHS1O60500 1241 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 SRPX2O60687 465 aaPredicted RBP11.36□□□□□ -0.59
CUX1-210ENST00000497815 UGDHO60701 494 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 SH3BGRLO75368 114 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 CRCPO75575 148 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 NTRK1P04629 796 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 CHRNGP07510 517 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 MSL3P1P0C860 447 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ZNF28P17035 718 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 SLC5A2P31639 672 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ATP1A2P50993 1020 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 NEK2P51955 445 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 PCDH1Q08174 1060 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ARL13AQ5H913 290 aaPredicted RBP11.36□□□□□ -0.59
CUX1-210ENST00000497815 TCTE1Q5JU00 501 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 CES4AQ5XG92 561 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 RNF175Q8N4F7 328 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 CDYL2Q8N8U2 506 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 L3MBTL4Q8NA19 623 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 TTC29Q8NA56 475 aaPredicted RBP11.36□□□□□ -0.59
CUX1-210ENST00000497815 OR7G3Q8NG95 312 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 OR8K5Q8NH50 307 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ZCCHC10Q8TBK6 192 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 AGR3Q8TD06 166 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 AGAP11Q8TF27 550 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 UBE2E3Q969T4 207 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 NXPE2Q96DL1 559 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms