RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	STXBP1	P61764	594 aa	Known RBP	12.98	□□□□□ -0.33
APTX-231	ENST00000494973	SKP1	P63208	163 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	IRX1	P78414	480 aa	Predicted RBP	12.98	□□□□□ -0.33
APTX-231	ENST00000494973	ACY1	Q03154	408 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	RGS1	Q08116	209 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	PWP1	Q13610	501 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	TCTE1	Q5JU00	501 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	NIPAL1	Q6NVV3	410 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	ACAD11	Q709F0	780 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	TRIM46	Q7Z4K8	759 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	BPHL	Q86WA6	291 aa	Predicted RBP	12.98	□□□□□ -0.33
APTX-231	ENST00000494973	PARP9	Q8IXQ6	854 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	DDIAS	Q8IXT1	998 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	OR8K5	Q8NH50	307 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	WDR20	Q8TBZ3	569 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	KLHL6	Q8WZ60	621 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	MOCOS	Q96EN8	888 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	CMTM7	Q96FZ5	175 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	SLC41A2	Q96JW4	573 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	PPP3R2	Q96LZ3	170 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	NRTN	Q99748	197 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	NUDT22	Q9BRQ3	303 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	STRADB	Q9C0K7	418 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	AHSP	Q9NZD4	102 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	MARCO	Q9UEW3	520 aa	Predicted RBP	12.98	□□□□□ -0.33
APTX-231	ENST00000494973	CDV3	Q9UKY7	258 aa	Known RBP	12.98	□□□□□ -0.33
APTX-231	ENST00000494973	ZNF490	Q9ULM2	529 aa	Predicted RBP	12.98	□□□□□ -0.33
APTX-231	ENST00000494973	PLCL2	Q9UPR0	1127 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	FIS1	Q9Y3D6	152 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	PCDHGA4	Q9Y5G9	962 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	AP1M2	Q9Y6Q5	423 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	UNC13C	Q8NB66	2214 aa		12.98	□□□□□ -0.33
APTX-231	ENST00000494973	VPS13A	Q96RL7	3174 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	ASXL3	Q9C0F0	2248 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973		A0A088AWK7	358 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	NPIPB8	E9PQR5	432 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	FFAR3	O14843	346 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	SLC30A4	O14863	429 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	GPR42	O15529	346 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	ZSCAN9	O15535	394 aa	Predicted RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	PRAMEF4	O60810	478 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	RSL1D1	O76021	490 aa	Known RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	SEMA3D	O95025	777 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	KIT	P10721	976 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	CEACAM1	P13688	526 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	NELFE	P18615	380 aa	Known RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	ZNF10	P21506	573 aa	Predicted RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	PTX3	P26022	381 aa	Predicted RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	CCKBR	P32239	447 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	PPP1CA	P62136	330 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	MAD2L1	Q13257	205 aa	Predicted RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	CUL3	Q13618	768 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	PDCD2	Q16342	344 aa	Predicted RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	SMU1	Q2TAY7	513 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	TMEM35A	Q53FP2	167 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	PRAMEF9	Q5VWM5	478 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	FCRL6	Q6DN72	434 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	CLEC6A	Q6EIG7	209 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	CHSY3	Q70JA7	882 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	ASPG	Q86U10	573 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	SLITRK4	Q8IW52	837 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	D2HGDH	Q8N465	521 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	HUS1B	Q8NHY5	278 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	DEPDC7	Q96QD5	511 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	ROGDI	Q9GZN7	287 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	ZNF395	Q9H8N7	513 aa	Predicted RBP	12.97	□□□□□ -0.33
APTX-231	ENST00000494973	MEAF6	Q9HAF1	191 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	NPHS2	Q9NP85	383 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	DMRT3	Q9NQL9	472 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	PNPO	Q9NVS9	261 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	KLHL3	Q9UH77	587 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	PILRA	Q9UKJ1	303 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	TMED5	Q9Y3A6	229 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	TIMM22	Q9Y584	194 aa		12.97	□□□□□ -0.33
APTX-231	ENST00000494973	GOLGA8Q	A0A0J9YX86	632 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	IGHV5-10-1	A0A0J9YXX1	117 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973		A0A1B0GTL3	188 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	GOLGA8O	A6NCC3	632 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	GOLGA8N	F8WBI6	632 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	PIP5K1B	O14986	540 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	SKAP2	O75563	359 aa	Predicted RBP	12.96	□□□□□ -0.33
APTX-231	ENST00000494973	SNRNP200	O75643	2136 aa	Known RBP	12.96	□□□□□ -0.33
APTX-231	ENST00000494973	SERPINA6	P08185	405 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	PVR	P15151	417 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	PRPH2	P23942	346 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	MAPK1	P28482	360 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	CSTF2	P33240	577 aa	Known RBP eCLIP	12.96	□□□□□ -0.33
APTX-231	ENST00000494973	BCL6	P41182	706 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	TSFM	P43897	325 aa	Known RBP	12.96	□□□□□ -0.33
APTX-231	ENST00000494973	LSS	P48449	732 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	EMP3	P54852	163 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	FOXA1	P55317	472 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	MEF2A	Q02078	507 aa	Predicted RBP	12.96	□□□□□ -0.33
APTX-231	ENST00000494973	CFHR1	Q03591	330 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	EIF3I	Q13347	325 aa	Known RBP	12.96	□□□□□ -0.33
APTX-231	ENST00000494973	DDX39B	Q13838	428 aa	Known RBP	12.96	□□□□□ -0.33
APTX-231	ENST00000494973	NDUFA9	Q16795	377 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	UGT3A2	Q3SY77	523 aa		12.96	□□□□□ -0.33
APTX-231	ENST00000494973	ATP6AP1L	Q52LC2	224 aa		12.96	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms